LOCUS AEC09999.1 475 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Rho termination factor protein.
ACCESSION CP002685-6307
PROTEIN_ID AEC09999.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G41550"
/gene_synonym="T32G6.7"
/gene_synonym="T32G6_7"
/inference="Similar to RNA sequence,
EST:INSD:AI995519.1,INSD:AU239638.1,INSD:ES209477.1,
INSD:EL992281.1,INSD:EH812183.1,INSD:ES181056.1,
INSD:EH924442.1,INSD:ES078306.1,INSD:ES131400.1,
INSD:ES157355.1,INSD:ES065051.1,INSD:ES140350.1,
INSD:ES179002.1,INSD:ES180915.1,INSD:EL978430.1,
INSD:ES119615.1,INSD:ES176492.1,INSD:ES025013.1,
INSD:EL971050.1,INSD:ES203744.1,INSD:ES059909.1,
INSD:BX840004.1,INSD:DR363431.1,INSD:EL225505.1,
INSD:AU230972.1,INSD:ES098318.1,INSD:ES087322.1,
INSD:EL997960.1,INSD:EL999285.1,INSD:ES148265.1,
INSD:AV533976.1,INSD:ES123231.1,INSD:DR380267.1,
INSD:BX835976.1,INSD:BE523733.1,INSD:ES143084.1,
INSD:ES196547.1,INSD:BX836332.1,INSD:ES169777.1,
INSD:ES039831.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK118768.1,INSD:BT005497.1"
/note="Rho termination factor; FUNCTIONS IN: transcription
termination factor activity; INVOLVED IN: transcription
termination; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6
growth stages; CONTAINS InterPro DOMAIN/s: Rho termination
factor, N-terminal (InterPro:IPR011112); Has 1046 Blast
hits to 715 proteins in 227 species: Archae - 8; Bacteria
- 305; Metazoa - 330; Fungi - 184; Plants - 18; Viruses -
2; Other Eukaryotes - 199 (source: NCBI BLink)."
/db_xref="Araport:AT2G41550"
/db_xref="TAIR:AT2G41550"
intron_pos 13:1 (1/4)
intron_pos 39:1 (2/4)
intron_pos 102:0 (3/4)
intron_pos 173:0 (4/4)
BEGIN
1 MDDDDDLWGP PRVFVVVQDD TFRKQTVRRC EFWFDFRTDV LEENFQNEKY CELVWRILTE
61 KKRQVTEIAE LERVSVSVSA QNDTASSGSG GDLHEIDSSD SDKTLSTTLP DSDTSSAKLA
121 LDDDENTSSI SDAQTAQTVQ IRDSSNDDTE DIEPETRLMP HETAANDPLT VEVAEDADTS
181 SSPVLESKID EAEEHSCSSL VTDQVFDPIK QALENKSSSA ISRESIGGST LRPLHLETRE
241 KANTTDEDGD ILKDHQQNDS LQDIVTVSEP FTTESLLEMC DEPDKGRDIP CGERSKKSHP
301 EAVVKTVVKD ELIISLLTEA RKKAESKNPG SVLIKKRQRQ SNSSDNKGAN TSFIRNIKQK
361 VQGGAGEINI DPVKNSTQST PKIIRGSSVP TQHADSLLDS SMDGKIQRGG KNVSGSLISL
421 SISELKKKTG KELRSIAKDL KVQHYYKLKK EDLLQRITNQ LNPQLADCTK QRMES
//