LOCUS AEC09818.1 753 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Transducin/WD40 repeat-like superfamily
protein protein.
ACCESSION CP002685-6045
PROTEIN_ID AEC09818.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G40360"
/gene_synonym="T3G21.13"
/gene_synonym="T3G21_13"
/inference="Similar to RNA sequence,
EST:INSD:BP649700.1,INSD:BP666408.1,INSD:BP650323.1,
INSD:EL199725.1,INSD:EL988915.1,INSD:ES087130.1,
INSD:DR295281.1,INSD:AV543642.1,INSD:ES050222.1,
INSD:BP778799.1,INSD:BP818057.1,INSD:BP783402.1,
INSD:DR381820.1,INSD:BP800852.1,INSD:BP608502.1,
INSD:EL248880.1,INSD:AV811096.1,INSD:AV821823.1,
INSD:AV792497.1,INSD:BP786883.1,INSD:AV793104.1,
INSD:BP788544.1,INSD:EL111404.1,INSD:ES204117.1,
INSD:BP639304.1,INSD:BP819151.1,INSD:BP660001.1,
INSD:BE530545.1,INSD:BP613630.1,INSD:ES081693.1,
INSD:AV808527.1,INSD:BP826724.1,INSD:EL998340.1,
INSD:AV791452.1,INSD:BP640260.1,INSD:DR363818.1,
INSD:EG501465.1,INSD:BP562258.1,INSD:EL256881.1,
INSD:EL221843.1,INSD:AV548154.1,INSD:BP612736.1,
INSD:T75849.1,INSD:DR355623.1,INSD:BP778498.1,
INSD:BP667157.1,INSD:AV830360.1,INSD:BP641199.1,
INSD:DR363819.1,INSD:BP790052.1,INSD:EH931218.1,
INSD:BX835868.1,INSD:BP781581.1,INSD:BP668033.1,
INSD:BP835628.1,INSD:BP830424.1,INSD:EL126290.1,
INSD:BP784724.1,INSD:EL982429.1,INSD:DR355624.1,
INSD:EH832218.1,INSD:T75850.1,INSD:DR356617.1,
INSD:EH975532.1,INSD:ES043271.1,INSD:AI993334.1,
INSD:AV809165.1,INSD:BP588077.1,INSD:EH973567.1,
INSD:EL988879.1,INSD:ES118728.1,INSD:EH847191.1,
INSD:EH938154.1,INSD:EH971959.1"
/note="Transducin/WD40 repeat-like superfamily protein;
FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA
processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782),
WD40 repeat, conserved site (InterPro:IPR019775), WD40
repeat (InterPro:IPR001680), BOP1, N-terminal
(InterPro:IPR012953), WD40 repeat-like-containing domain
(InterPro:IPR011046), WD40-repeat-containing domain
(InterPro:IPR017986), WD40/YVTN repeat-like-containing
domain (InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: HEAT repeat; WD domain, G-beta repeat protein
protein (TAIR:AT5G01770.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G40360"
/db_xref="TAIR:AT2G40360"
intron_pos 56:0 (1/13)
intron_pos 97:1 (2/13)
intron_pos 143:0 (3/13)
intron_pos 194:2 (4/13)
intron_pos 234:0 (5/13)
intron_pos 320:1 (6/13)
intron_pos 356:2 (7/13)
intron_pos 391:0 (8/13)
intron_pos 441:1 (9/13)
intron_pos 485:2 (10/13)
intron_pos 521:1 (11/13)
intron_pos 543:0 (12/13)
intron_pos 726:1 (13/13)
BEGIN
1 MTKRSKGANE DKLIETKSKN VSGKSQKQKK PVEAESLKEE DLLQASGTDS DYDGDSLPGS
61 LNSDDFDSDF SDSEDDGTHE GTEDGDVEFS DDDDVLEHDG SIDNEDDDGS EHVGSDNNEE
121 HGSDEDSERG EAVEESDSSE DEVPSRNTVG NVPLKWYEDE KHIGYDLTGK KITKKEKQDK
181 LDSFLATIDD SKTWRKIYDE YNDEDVELTK EESKIVQRIL KGEAPHADFD PYAPYVEWFK
241 HDDAIHPLSS APEPKRRFIP SKWEAKKVVK IVRAIRKGWI KFDKPEEEPN VYLLWGDDST
301 SDQKSKHLTY IPPPKLKLPG HDESYNPSLE YIPTEEEKAS YELMFEEDRP KFIPTRFTSL
361 RSIPAYENAL KESFERCLDL YLCPRVRKKR INIDPESLKP KLPSRKDLRP YPNSCYLEYK
421 GHTGAVTSIS TDSSGEWIAS GSTDGSVRMW EVETGRCLKV WQFDEAIMCV AWNPLSRLPV
481 LAVAMGRDLF FLNTELGTDE EQEITKERLH SGNIPEPDAS VAAIVTWLPD ELYGGIKIRH
541 FKSISSIDWH RKGDYLSTVM ASGETRGVVL HQLSKQKTQR LPFKIRGLPV CTLFHPSLSY
601 FFVATRKDVR VYNLLKPGEA TKKLETGLRE ISSMAIHPGG DNLIVGSKEG KMCWFDMDLS
661 SKPYKTLKNH PKDITNVAVH RSYPLFASCS EDSTAYVFHG MVYNDLNQNP LIVPLEILRG
721 HSSKGGVLDC KFHPRQPWLF TAGADSIIKL YCH
//