LOCUS AEC09651.1 1181 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana regulator of nonsense transcripts
UPF2 protein.
ACCESSION CP002685-5811
PROTEIN_ID AEC09651.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G39260"
/gene_synonym="T16B24.10"
/gene_synonym="T16B24_10"
/inference="Similar to RNA sequence,
EST:INSD:AA395660.1,INSD:ES031383.1,INSD:EL112618.1,
INSD:CD532464.1,INSD:T21705.1,INSD:EL099854.1,
INSD:EG445519.1,INSD:EH989928.1,INSD:EL263635.1,
INSD:AV820976.1,INSD:EL218737.1,INSD:BP654333.1,
INSD:EL147376.1,INSD:CF773795.1,INSD:AV559582.1,
INSD:EL995314.1,INSD:AA712768.1,INSD:EH904156.1,
INSD:ES026966.1,INSD:EH856164.1,INSD:ES125530.1,
INSD:EL219889.1,INSD:AV522658.1,INSD:EH887330.1,
INSD:AV524226.1,INSD:EL062670.1,INSD:ES106935.1,
INSD:EL151393.1,INSD:EL153428.1,INSD:EL233409.1,
INSD:ES131864.1,INSD:ES082219.1,INSD:ES118376.1,
INSD:AV546204.1,INSD:EL204853.1,INSD:EH918785.1,
INSD:EH955954.1,INSD:AV546356.1,INSD:EL009623.1,
INSD:EL135563.1,INSD:AV530070.1,INSD:EH826349.1,
INSD:EH931596.1,INSD:BP866408.1,INSD:CB252091.1,
INSD:ES040505.1,INSD:AV528153.1,INSD:AV524212.1,
INSD:ES166968.1,INSD:AV528458.1,INSD:EH956987.1,
INSD:EL037994.1,INSD:BP650700.1,INSD:CK118424.1,
INSD:EH978996.1,INSD:EH835315.1,INSD:EL119503.1,
INSD:ES163804.1,INSD:ES109388.1,INSD:EL158097.1"
/note="binding;RNA binding; FUNCTIONS IN: RNA binding,
binding; INVOLVED IN: translation, RNA metabolic process;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Armadillo-type fold
(InterPro:IPR016024), MIF4G-like, type 3
(InterPro:IPR003890), Up-frameshift suppressor 2
(InterPro:IPR007193), MIF4-like, type 1/2/3
(InterPro:IPR016021); Has 8683 Blast hits to 5464 proteins
in 545 species: Archae - 34; Bacteria - 610; Metazoa -
3010; Fungi - 1047; Plants - 271; Viruses - 134; Other
Eukaryotes - 3577 (source: NCBI BLink)."
/db_xref="Araport:AT2G39260"
/db_xref="TAIR:AT2G39260"
intron_pos 17:0 (1/16)
intron_pos 46:1 (2/16)
intron_pos 114:0 (3/16)
intron_pos 227:0 (4/16)
intron_pos 262:0 (5/16)
intron_pos 304:2 (6/16)
intron_pos 362:2 (7/16)
intron_pos 390:0 (8/16)
intron_pos 488:0 (9/16)
intron_pos 554:0 (10/16)
intron_pos 588:0 (11/16)
intron_pos 672:0 (12/16)
intron_pos 745:0 (13/16)
intron_pos 802:0 (14/16)
intron_pos 864:0 (15/16)
intron_pos 1017:0 (16/16)
BEGIN
1 MDHPEDESHS EKQDDEEALA RLEEIKKSIE AKLTLRQNNL NPERPDSAYL RTLDSSIKRN
61 TAVIKKLKQI NEEQREGLMD DLRGVNLSKF VSEAVTAICE AKLKSSDIQA AVQICSLLHQ
121 RYKEFSASLT QGLLKVFFPG KSAEDLEADK NSKAMKKRST LKLLLELYYV GVIEDSNIFI
181 NIIKDLTSVE QLKDRDTTQT NLTLLTSFAR QGRIFLGLPI SGQDEDFFKG LDVTADQKKS
241 FKKAFNTYYD ALADLLQSEH KLLLQMEKEN AKLVNAKGEL SEDSASSYEK LRKSYDHLYR
301 NISSLAEALD MQPPVMPEDG TTRLTAGDEA SPSGTVKDTS VPEPIWDDED TKTFYECLPD
361 LRAFVPAVLL GEAEPKSNEQ SAKAKEKLSE SSSEVVENQQ TTEDTTEVSA DSASMDDRSN
421 AEQPKEKEEV EKEKAKDTKK EKGKEKDSEK KMEHEKEKGK SLDVANFERL LQRLPGCVSR
481 DLIDQLTVEY CYLNSKTNRK KLVKALFNVP RTSLELLAYY SRMVATLASC MKDIPSMLVQ
541 MLEDEFNSLV HKKDQMNIET KIRNIRFIGE LCKFKIVPAG LVFSCLKACL DEFTHHNIDV
601 ACNLLETCGR FLYRSPETTL RMTNMLDILM RLKNVKNLDP RQSTLVENAY YLCKPPERSA
661 RISKVRPPLH QYVRKLLFSD LDKDSIANVL KQLRKLPWSE CEQYILKCFM KVHKGKYGQI
721 HLIASLTSGL SRHHDEFVVA VVDEVLEEIR VGLELNEYGA QQKRLAHMRF LGELYNYEHV
781 DSSVIFETLY LTLLYGHDTS EQEVLDPPED FFRVRMVIIL LETCGHYFDR GSSKKRLDQF
841 LIHFQRYILS KGHLPLDIEF DLQDLFANLR PNMTRYSTID EVNAAILQLE EREHASSGDK
901 VSIERHSDTK PSNKSSSDVI SSNGKSTAKD IRENGEAHGE ESDSDSGSGS VVRDGQNEEL
961 DDGNHERGSE SGDGDDYDDG DGPGSDDDKF RVRQKVVTVD LEEQADFDQE LKALLQESME
1021 QRKLELRGRP ALNMTIPMSV FEGSGKDHHH FGRVVGENGE EVLDEENGEQ REVQVKVLVK
1081 RGNKQQTRQM LIPSDCALVQ STKQKEAAEL EEKQDIKRLV LEYNERDEEE ANGLGTQILN
1141 WTSGGSRGST RTGEGSGKSG GSRHRFYYHQ GGGGSYHARR K
//