LOCUS AEC09651.1 1181 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana regulator of nonsense transcripts UPF2 protein. ACCESSION CP002685-5811 PROTEIN_ID AEC09651.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 19698289) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 19698289) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 19698289) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" protein /locus_tag="AT2G39260" /gene_synonym="T16B24.10" /gene_synonym="T16B24_10" /inference="Similar to RNA sequence, EST:INSD:AA395660.1,INSD:ES031383.1,INSD:EL112618.1, INSD:CD532464.1,INSD:T21705.1,INSD:EL099854.1, INSD:EG445519.1,INSD:EH989928.1,INSD:EL263635.1, INSD:AV820976.1,INSD:EL218737.1,INSD:BP654333.1, INSD:EL147376.1,INSD:CF773795.1,INSD:AV559582.1, INSD:EL995314.1,INSD:AA712768.1,INSD:EH904156.1, INSD:ES026966.1,INSD:EH856164.1,INSD:ES125530.1, INSD:EL219889.1,INSD:AV522658.1,INSD:EH887330.1, INSD:AV524226.1,INSD:EL062670.1,INSD:ES106935.1, INSD:EL151393.1,INSD:EL153428.1,INSD:EL233409.1, INSD:ES131864.1,INSD:ES082219.1,INSD:ES118376.1, INSD:AV546204.1,INSD:EL204853.1,INSD:EH918785.1, INSD:EH955954.1,INSD:AV546356.1,INSD:EL009623.1, INSD:EL135563.1,INSD:AV530070.1,INSD:EH826349.1, INSD:EH931596.1,INSD:BP866408.1,INSD:CB252091.1, INSD:ES040505.1,INSD:AV528153.1,INSD:AV524212.1, INSD:ES166968.1,INSD:AV528458.1,INSD:EH956987.1, INSD:EL037994.1,INSD:BP650700.1,INSD:CK118424.1, INSD:EH978996.1,INSD:EH835315.1,INSD:EL119503.1, INSD:ES163804.1,INSD:ES109388.1,INSD:EL158097.1" /note="binding;RNA binding; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), Up-frameshift suppressor 2 (InterPro:IPR007193), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 8683 Blast hits to 5464 proteins in 545 species: Archae - 34; Bacteria - 610; Metazoa - 3010; Fungi - 1047; Plants - 271; Viruses - 134; Other Eukaryotes - 3577 (source: NCBI BLink)." /db_xref="Araport:AT2G39260" /db_xref="TAIR:AT2G39260" intron_pos 17:0 (1/16) intron_pos 46:1 (2/16) intron_pos 114:0 (3/16) intron_pos 227:0 (4/16) intron_pos 262:0 (5/16) intron_pos 304:2 (6/16) intron_pos 362:2 (7/16) intron_pos 390:0 (8/16) intron_pos 488:0 (9/16) intron_pos 554:0 (10/16) intron_pos 588:0 (11/16) intron_pos 672:0 (12/16) intron_pos 745:0 (13/16) intron_pos 802:0 (14/16) intron_pos 864:0 (15/16) intron_pos 1017:0 (16/16) BEGIN 1 MDHPEDESHS EKQDDEEALA RLEEIKKSIE AKLTLRQNNL NPERPDSAYL RTLDSSIKRN 61 TAVIKKLKQI NEEQREGLMD DLRGVNLSKF VSEAVTAICE AKLKSSDIQA AVQICSLLHQ 121 RYKEFSASLT QGLLKVFFPG KSAEDLEADK NSKAMKKRST LKLLLELYYV GVIEDSNIFI 181 NIIKDLTSVE QLKDRDTTQT NLTLLTSFAR QGRIFLGLPI SGQDEDFFKG LDVTADQKKS 241 FKKAFNTYYD ALADLLQSEH KLLLQMEKEN AKLVNAKGEL SEDSASSYEK LRKSYDHLYR 301 NISSLAEALD MQPPVMPEDG TTRLTAGDEA SPSGTVKDTS VPEPIWDDED TKTFYECLPD 361 LRAFVPAVLL GEAEPKSNEQ SAKAKEKLSE SSSEVVENQQ TTEDTTEVSA DSASMDDRSN 421 AEQPKEKEEV EKEKAKDTKK EKGKEKDSEK KMEHEKEKGK SLDVANFERL LQRLPGCVSR 481 DLIDQLTVEY CYLNSKTNRK KLVKALFNVP RTSLELLAYY SRMVATLASC MKDIPSMLVQ 541 MLEDEFNSLV HKKDQMNIET KIRNIRFIGE LCKFKIVPAG LVFSCLKACL DEFTHHNIDV 601 ACNLLETCGR FLYRSPETTL RMTNMLDILM RLKNVKNLDP RQSTLVENAY YLCKPPERSA 661 RISKVRPPLH QYVRKLLFSD LDKDSIANVL KQLRKLPWSE CEQYILKCFM KVHKGKYGQI 721 HLIASLTSGL SRHHDEFVVA VVDEVLEEIR VGLELNEYGA QQKRLAHMRF LGELYNYEHV 781 DSSVIFETLY LTLLYGHDTS EQEVLDPPED FFRVRMVIIL LETCGHYFDR GSSKKRLDQF 841 LIHFQRYILS KGHLPLDIEF DLQDLFANLR PNMTRYSTID EVNAAILQLE EREHASSGDK 901 VSIERHSDTK PSNKSSSDVI SSNGKSTAKD IRENGEAHGE ESDSDSGSGS VVRDGQNEEL 961 DDGNHERGSE SGDGDDYDDG DGPGSDDDKF RVRQKVVTVD LEEQADFDQE LKALLQESME 1021 QRKLELRGRP ALNMTIPMSV FEGSGKDHHH FGRVVGENGE EVLDEENGEQ REVQVKVLVK 1081 RGNKQQTRQM LIPSDCALVQ STKQKEAAEL EEKQDIKRLV LEYNERDEEE ANGLGTQILN 1141 WTSGGSRGST RTGEGSGKSG GSRHRFYYHQ GGGGSYHARR K //