LOCUS AEC09510.1 404 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein protein.
ACCESSION CP002685-5611
PROTEIN_ID AEC09510.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="APD3"
/locus_tag="AT2G38220"
/gene_synonym="ABERRANT POLLEN DEVELOPMENT 3"
/gene_synonym="F16M14.15"
/gene_synonym="F16M14_15"
/inference="Similar to RNA sequence,
EST:INSD:EG432864.1,INSD:EG432865.1,INSD:EG432867.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; CONTAINS InterPro
DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841);
BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT2G38195.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="Araport:AT2G38220"
/db_xref="TAIR:AT2G38220"
intron_pos 52:1 (1/9)
intron_pos 88:0 (2/9)
intron_pos 131:0 (3/9)
intron_pos 162:1 (4/9)
intron_pos 193:1 (5/9)
intron_pos 221:0 (6/9)
intron_pos 272:0 (7/9)
intron_pos 297:1 (8/9)
intron_pos 380:2 (9/9)
BEGIN
1 MGSIRGDLQP LFVMPPPPLD EDCDDIFNSD ESSWGLLSLS CFGIIMGLWF FASVCLIFGV
61 YGSETVWLGP NSSILVKPSS IFVKSIKVKE LDFSKPGLQL YGFNGQSTPS GYFVNWTESR
121 VLSVSQNSYK GWPYYLNRGT HMNISYNILP KGSAVRLVIT EGSQVIGMPF FYRSSLKDIA
181 FRDTAWSWNL IQGSGMIQLD ISKSKGYYLT VANLKRKDIE VELDIDVKAV LYDTKQTSYN
241 CSFSNGECSF KMNERYPVEN YAVVTSPALG QGVSIDDEWY IELSYQPRLI AYGSFTGVLL
301 SFMLVAIHFC NKLKCCGGEG FLSGDDSVRT CLLADKGDND CCNDVEASNK SLCAICFDAP
361 RDCCFLPCGH CVSCYQCGTK IKRTKGRCPI CRKKMIHVKR IYTA
//