LOCUS AEC09332.1 547 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNApolymerase sigma-subunit F protein.
ACCESSION CP002685-5359
PROTEIN_ID AEC09332.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="SIGF"
/locus_tag="AT2G36990"
/gene_synonym="ATSIG6"
/gene_synonym="RNApolymerase sigma-subunit F"
/gene_synonym="SIG6"
/gene_synonym="SIGMA FACTOR 6"
/gene_synonym="SOLDAT8"
/gene_synonym="T1J8.17"
/gene_synonym="T1J8_17"
/inference="Similar to RNA sequence,
EST:INSD:DR216721.1,INSD:BP793013.1,INSD:BP817981.1,
INSD:EH910259.1,INSD:BP815667.1,INSD:EL106681.1,
INSD:BP831734.1,INSD:EH841818.1,INSD:EH883508.1,
INSD:AV806256.1,INSD:BP777675.1,INSD:ES084664.1,
INSD:DR381116.1,INSD:BP632417.1,INSD:AV794867.1,
INSD:BP564770.1,INSD:BP667674.1,INSD:EL183805.1,
INSD:EL207340.1,INSD:BP802780.1,INSD:BP806389.1,
INSD:BP607129.1,INSD:EL219393.1,INSD:EH880723.1,
INSD:EL317788.1,INSD:AV818249.1,INSD:ES082681.1,
INSD:EH874985.1,INSD:BP661451.1,INSD:BP646131.1,
INSD:BP615334.1,INSD:ES190413.1,INSD:AV826429.1,
INSD:EG479425.1,INSD:DR370600.1,INSD:EL069196.1,
INSD:BP652034.1,INSD:EH893893.1,INSD:DR295669.1,
INSD:ES112050.1,INSD:EH968349.1,INSD:EH930633.1,
INSD:BP607265.1,INSD:BP659137.1,INSD:BP627521.1,
INSD:BP794237.1,INSD:EL980407.1,INSD:BP779866.1,
INSD:BP791836.1,INSD:BP860757.2,INSD:EH809525.1,
INSD:EH988808.1,INSD:BP789348.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY091182.1,INSD:AY059768.1,INSD:AB029916.1,
INSD:AJ277389.1,INSD:AJ250812.1"
/note="RNApolymerase sigma-subunit F (SIGF); CONTAINS
InterPro DOMAIN/s: RNA polymerase sigma factor, region 2
(InterPro:IPR013325), Winged helix-turn-helix
transcription repressor DNA-binding (InterPro:IPR011991),
RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA
polymerase sigma-70 (InterPro:IPR014284), RNA polymerase
sigma factor, region 3/4 (InterPro:IPR013324), RNA
polymerase sigma factor, SigB/SigC/SigD, plastid
(InterPro:IPR016262), RNA polymerase sigma-70 factor
(InterPro:IPR000943), RNA polymerase sigma-70 region 2
(InterPro:IPR007627), RNA polymerase sigma-70 region 4
(InterPro:IPR007630); BEST Arabidopsis thaliana protein
match is: RNApolymerase sigma subunit 2
(TAIR:AT1G08540.1); Has 23918 Blast hits to 23899 proteins
in 2801 species: Archae - 0; Bacteria - 17084; Metazoa -
1; Fungi - 2; Plants - 241; Viruses - 15; Other Eukaryotes
- 6575 (source: NCBI BLink)."
/db_xref="Araport:AT2G36990"
/db_xref="TAIR:AT2G36990"
intron_pos 30:1 (1/8)
intron_pos 82:0 (2/8)
intron_pos 114:2 (3/8)
intron_pos 176:2 (4/8)
intron_pos 262:0 (5/8)
intron_pos 339:0 (6/8)
intron_pos 386:0 (7/8)
intron_pos 453:0 (8/8)
BEGIN
1 MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS
61 QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK FEQQLLHSTG LWNLLISPLT
121 SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS
181 LPEKGNIVRS KRQLERRAKN RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW
241 GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301 IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA
361 TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK TCVQEGNYRP SKEELAGHVG
421 VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL
481 NVLSPKERRI IKLRFGIDGG KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH
541 AYADLLV
//