LOCUS AEC09332.1 547 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana RNApolymerase sigma-subunit F protein. ACCESSION CP002685-5359 PROTEIN_ID AEC09332.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 19698289) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 19698289) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 19698289) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" protein /gene="SIGF" /locus_tag="AT2G36990" /gene_synonym="ATSIG6" /gene_synonym="RNApolymerase sigma-subunit F" /gene_synonym="SIG6" /gene_synonym="SIGMA FACTOR 6" /gene_synonym="SOLDAT8" /gene_synonym="T1J8.17" /gene_synonym="T1J8_17" /inference="Similar to RNA sequence, EST:INSD:DR216721.1,INSD:BP793013.1,INSD:BP817981.1, INSD:EH910259.1,INSD:BP815667.1,INSD:EL106681.1, INSD:BP831734.1,INSD:EH841818.1,INSD:EH883508.1, INSD:AV806256.1,INSD:BP777675.1,INSD:ES084664.1, INSD:DR381116.1,INSD:BP632417.1,INSD:AV794867.1, INSD:BP564770.1,INSD:BP667674.1,INSD:EL183805.1, INSD:EL207340.1,INSD:BP802780.1,INSD:BP806389.1, INSD:BP607129.1,INSD:EL219393.1,INSD:EH880723.1, INSD:EL317788.1,INSD:AV818249.1,INSD:ES082681.1, INSD:EH874985.1,INSD:BP661451.1,INSD:BP646131.1, INSD:BP615334.1,INSD:ES190413.1,INSD:AV826429.1, INSD:EG479425.1,INSD:DR370600.1,INSD:EL069196.1, INSD:BP652034.1,INSD:EH893893.1,INSD:DR295669.1, INSD:ES112050.1,INSD:EH968349.1,INSD:EH930633.1, INSD:BP607265.1,INSD:BP659137.1,INSD:BP627521.1, INSD:BP794237.1,INSD:EL980407.1,INSD:BP779866.1, INSD:BP791836.1,INSD:BP860757.2,INSD:EH809525.1, INSD:EH988808.1,INSD:BP789348.1" /inference="similar to RNA sequence, mRNA:INSD:AY091182.1,INSD:AY059768.1,INSD:AB029916.1, INSD:AJ277389.1,INSD:AJ250812.1" /note="RNApolymerase sigma-subunit F (SIGF); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23918 Blast hits to 23899 proteins in 2801 species: Archae - 0; Bacteria - 17084; Metazoa - 1; Fungi - 2; Plants - 241; Viruses - 15; Other Eukaryotes - 6575 (source: NCBI BLink)." /db_xref="Araport:AT2G36990" /db_xref="TAIR:AT2G36990" intron_pos 30:1 (1/8) intron_pos 82:0 (2/8) intron_pos 114:2 (3/8) intron_pos 176:2 (4/8) intron_pos 262:0 (5/8) intron_pos 339:0 (6/8) intron_pos 386:0 (7/8) intron_pos 453:0 (8/8) BEGIN 1 MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS 61 QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK FEQQLLHSTG LWNLLISPLT 121 SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS 181 LPEKGNIVRS KRQLERRAKN RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW 241 GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD 301 IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA 361 TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK TCVQEGNYRP SKEELAGHVG 421 VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL 481 NVLSPKERRI IKLRFGIDGG KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH 541 AYADLLV //