LOCUS AEC08936.1 989 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Transcription elongation factor Spt5 protein.
ACCESSION CP002685-4864
PROTEIN_ID AEC08936.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G34210"
/gene_synonym="F13P17.5"
/gene_synonym="F13P17_5"
/gene_synonym="SPT5-1"
/note="Transcription elongation factor Spt5; FUNCTIONS IN:
transcription elongation regulator activity, structural
constituent of ribosome, transcription initiation factor
activity; INVOLVED IN: regulation of transcription from
RNA polymerase II promoter, translation, positive
regulation of RNA elongation from RNA polymerase II
promoter; LOCATED IN: ribosome, intracellular; EXPRESSED
IN: sperm cell; CONTAINS InterPro DOMAIN/s: Translation
protein SH3-like (InterPro:IPR008991), Transcription
antitermination protein, NusG, N-terminal
(InterPro:IPR006645), Transcription elongation factor Spt5
(InterPro:IPR017071), KOW (InterPro:IPR005824), Ribosomal
protein L24/L26, conserved site (InterPro:IPR005825),
Transcription elongation factor Spt5, NGN domain
(InterPro:IPR005100); BEST Arabidopsis thaliana protein
match is: global transcription factor group A2
(TAIR:AT4G08350.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="Araport:AT2G34210"
/db_xref="TAIR:AT2G34210"
intron_pos 97:1 (1/18)
intron_pos 178:0 (2/18)
intron_pos 227:0 (3/18)
intron_pos 281:0 (4/18)
intron_pos 309:0 (5/18)
intron_pos 332:2 (6/18)
intron_pos 452:0 (7/18)
intron_pos 504:0 (8/18)
intron_pos 536:2 (9/18)
intron_pos 553:0 (10/18)
intron_pos 604:0 (11/18)
intron_pos 667:1 (12/18)
intron_pos 723:1 (13/18)
intron_pos 768:1 (14/18)
intron_pos 794:2 (15/18)
intron_pos 839:1 (16/18)
intron_pos 876:1 (17/18)
intron_pos 909:0 (18/18)
BEGIN
1 MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS
61 AFIDWEVEVD DDVEDDDDDV DVEDGKQQLK FGDFSLCFIV SGEADLPNED SDHRRQYYQR
121 GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR
181 EREVAVCLMQ KIVDRGSEFK IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI
241 LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301 LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD
361 GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD ESTLFANRKK GHFMKGDAVI
421 VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG
481 GTGMIVKVDQ HMLIILSDTT KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF
541 GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601 PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR
661 ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY SGRLVEVKDK LVRVELEAKI
721 VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR
781 GRAWNPYMPM SPPRDNWEDG NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN
841 APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901 GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE
961 DGQDGIVKLD ESLDIKILKL TILAKLVHE
//