LOCUS AEC08936.1 989 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana Transcription elongation factor Spt5 protein. ACCESSION CP002685-4864 PROTEIN_ID AEC08936.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 19698289) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 19698289) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 19698289) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" protein /locus_tag="AT2G34210" /gene_synonym="F13P17.5" /gene_synonym="F13P17_5" /gene_synonym="SPT5-1" /note="Transcription elongation factor Spt5; FUNCTIONS IN: transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: ribosome, intracellular; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Transcription elongation factor Spt5 (InterPro:IPR017071), KOW (InterPro:IPR005824), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), Transcription elongation factor Spt5, NGN domain (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: global transcription factor group A2 (TAIR:AT4G08350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /db_xref="Araport:AT2G34210" /db_xref="TAIR:AT2G34210" intron_pos 97:1 (1/18) intron_pos 178:0 (2/18) intron_pos 227:0 (3/18) intron_pos 281:0 (4/18) intron_pos 309:0 (5/18) intron_pos 332:2 (6/18) intron_pos 452:0 (7/18) intron_pos 504:0 (8/18) intron_pos 536:2 (9/18) intron_pos 553:0 (10/18) intron_pos 604:0 (11/18) intron_pos 667:1 (12/18) intron_pos 723:1 (13/18) intron_pos 768:1 (14/18) intron_pos 794:2 (15/18) intron_pos 839:1 (16/18) intron_pos 876:1 (17/18) intron_pos 909:0 (18/18) BEGIN 1 MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS 61 AFIDWEVEVD DDVEDDDDDV DVEDGKQQLK FGDFSLCFIV SGEADLPNED SDHRRQYYQR 121 GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR 181 EREVAVCLMQ KIVDRGSEFK IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI 241 LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID 301 LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD 361 GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD ESTLFANRKK GHFMKGDAVI 421 VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG 481 GTGMIVKVDQ HMLIILSDTT KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF 541 GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG 601 PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR 661 ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY SGRLVEVKDK LVRVELEAKI 721 VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR 781 GRAWNPYMPM SPPRDNWEDG NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN 841 APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP 901 GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE 961 DGQDGIVKLD ESLDIKILKL TILAKLVHE //