LOCUS AEC08442.1 1299 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana helicase in vascular tissue and tapetum
protein.
ACCESSION CP002685-4192
PROTEIN_ID AEC08442.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="HVT1"
/locus_tag="AT2G30800"
/gene_synonym="ATVT-1"
/gene_synonym="helicase in vascular tissue and tapetum"
/inference="Similar to RNA sequence,
EST:INSD:ES122483.1,INSD:AW004395.1,INSD:BE522239.1,
INSD:BE522238.1,INSD:BP780087.1,INSD:EH940195.1,
INSD:ES071443.1,INSD:BE525221.1,INSD:ES025029.1,
INSD:AV546296.1,INSD:BE524746.1,INSD:EL061569.1,
INSD:EL310641.1"
/inference="similar to RNA sequence,
mRNA:INSD:U10245.1,INSD:AK226731.1"
/note="helicase in vascular tissue and tapetum (HVT1);
CONTAINS InterPro DOMAIN/s: Helicase-associated domain
(InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box
type, N-terminal (InterPro:IPR011545), Domain of unknown
function DUF1605 (InterPro:IPR011709), Ankyrin
repeat-containing domain (InterPro:IPR020683), DEAD-like
helicase, N-terminal (InterPro:IPR014001), DNA/RNA
helicase, C-terminal (InterPro:IPR001650), Single-stranded
nucleic acid binding R3H (InterPro:IPR001374), Helicase,
superfamily 1/2, ATP-binding domain (InterPro:IPR014021);
BEST Arabidopsis thaliana protein match is: nuclear
DEIH-boxhelicase (TAIR:AT1G06670.1); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G30800"
/db_xref="TAIR:AT2G30800"
intron_pos 39:1 (1/13)
intron_pos 69:2 (2/13)
intron_pos 180:0 (3/13)
intron_pos 205:0 (4/13)
intron_pos 220:0 (5/13)
intron_pos 251:1 (6/13)
intron_pos 271:0 (7/13)
intron_pos 313:0 (8/13)
intron_pos 330:2 (9/13)
intron_pos 342:0 (10/13)
intron_pos 372:0 (11/13)
intron_pos 707:0 (12/13)
intron_pos 1079:0 (13/13)
BEGIN
1 MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK
61 MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL KCVSFPPGAD VILQELFTHY
121 PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI
181 TKLRSKLPIT SFKDAITSAV ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC
241 TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
301 VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC
361 PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS DHKLDLTDED KLALDEAIIL
421 AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK
481 SKDGMTALEL AEAENQLEAA QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ
541 LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
601 FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA
661 KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV EELCLQVKIL DPNCKTNDFL
721 QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL
781 DPALTLACAA DYKEPFTMPM SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG
841 RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
901 VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD
961 GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE EDDEEVAANT NEEVAANTNE
1021 EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT
1081 HPREHLPPHL GASMHAIAGI LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN
1141 SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201 MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM
1261 AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
//