LOCUS AEC07666.1 1384 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana chromatin remodeling factor CHD3
(PICKLE) protein.
ACCESSION CP002685-3119
PROTEIN_ID AEC07666.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="PKL"
/locus_tag="AT2G25170"
/gene_synonym="AT2G25170.1"
/gene_synonym="CHD3"
/gene_synonym="CHD3 PROTEIN"
/gene_synonym="CHR6"
/gene_synonym="CKH2"
/gene_synonym="CYTOKININ-HYPERSENSITIVE 2"
/gene_synonym="ENHANCED PHOTOMORPHOGENIC 1"
/gene_synonym="EPP1"
/gene_synonym="GYM"
/gene_synonym="GYMNOS"
/gene_synonym="PICKLE"
/gene_synonym="SSL2"
/gene_synonym="SUPPRESSOR OF SLR 2"
/inference="Similar to RNA sequence,
EST:INSD:EG431825.1,INSD:ES014631.1,INSD:AU229029.1,
INSD:ES086888.1,INSD:ES068968.1,INSD:ES055320.1,
INSD:EL085414.1,INSD:EL240933.1,INSD:EL976079.1,
INSD:ES172239.1,INSD:EL109531.1,INSD:EL007452.1,
INSD:ES160328.1,INSD:ES034037.1,INSD:ES102956.1,
INSD:ES031185.1,INSD:EL205746.1,INSD:ES170620.1,
INSD:AV551529.1,INSD:EL299286.1,INSD:EH798576.1,
INSD:EH844611.1,INSD:EL331295.1,INSD:EG431824.1,
INSD:EL142399.1,INSD:EL301892.1,INSD:EH851370.1,
INSD:EH890842.1,INSD:EH939606.1,INSD:EH870984.1,
INSD:EL134641.1,INSD:EL241273.1,INSD:EL228954.1,
INSD:EL974955.1,INSD:ES007660.1,INSD:ES192990.1,
INSD:ES103565.1,INSD:ES068848.1,INSD:EH848311.1,
INSD:BP793236.1,INSD:ES103357.1,INSD:BP794175.1,
INSD:ES164439.1"
/inference="similar to RNA sequence, mRNA:INSD:AF185577.1"
/note="PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF1087 (InterPro:IPR009463), Zinc
finger, RING-type (InterPro:IPR001841), Zinc finger,
PHD-type, conserved site (InterPro:IPR019786), Zinc
finger, PHD-type (InterPro:IPR001965), Protein of unknown
function DUF1086 (InterPro:IPR009462), Chromo domain
(InterPro:IPR000953), SNF2-related (InterPro:IPR000330),
DEAD-like helicase, N-terminal (InterPro:IPR014001),
Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase,
C-terminal (InterPro:IPR001650), Zinc finger,
FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily
1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger,
PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana
protein match is: chromatin remodeling factor, putative
(TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins
in 1958 species: Archae - 161; Bacteria - 5176; Metazoa -
5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other
Eukaryotes - 3455 (source: NCBI BLink)."
/db_xref="Araport:AT2G25170"
/db_xref="TAIR:AT2G25170"
intron_pos 48:0 (1/29)
intron_pos 94:0 (2/29)
intron_pos 145:2 (3/29)
intron_pos 199:2 (4/29)
intron_pos 271:1 (5/29)
intron_pos 303:1 (6/29)
intron_pos 349:0 (7/29)
intron_pos 420:0 (8/29)
intron_pos 456:0 (9/29)
intron_pos 473:0 (10/29)
intron_pos 506:1 (11/29)
intron_pos 554:0 (12/29)
intron_pos 588:2 (13/29)
intron_pos 635:0 (14/29)
intron_pos 691:2 (15/29)
intron_pos 714:0 (16/29)
intron_pos 755:0 (17/29)
intron_pos 791:2 (18/29)
intron_pos 819:0 (19/29)
intron_pos 884:0 (20/29)
intron_pos 933:1 (21/29)
intron_pos 967:2 (22/29)
intron_pos 992:2 (23/29)
intron_pos 1014:1 (24/29)
intron_pos 1040:0 (25/29)
intron_pos 1083:2 (26/29)
intron_pos 1197:0 (27/29)
intron_pos 1241:1 (28/29)
intron_pos 1266:0 (29/29)
BEGIN
1 MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN
61 LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI DKILDCEMRP TKSSEQGSSD
121 AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED
181 DFVAIRPEWT TVDRILACRE EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV
241 NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
301 GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV
361 IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS YEMINLDSAV LKPIKWECMI
421 VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ
481 EEFKDINQEE QISRLHKMLA PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT
541 RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
601 DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK
661 NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ AMARAHRLGQ TNKVMIYRLI
721 NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG
781 KIHYDDAAID KLLDRDLVEA EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA
841 ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
901 DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI
961 FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH IAEEIDENSP TFSDGVPKEG
1021 LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA
1081 VLKHGYGRWQ AIVDDKELGI QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ
1141 NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201 SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA
1261 QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS INGNINTILS ITSDQSKSHE
1321 DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN
1381 MVVD
//