LOCUS AEC07666.1 1384 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana chromatin remodeling factor CHD3 (PICKLE) protein. ACCESSION CP002685-3119 PROTEIN_ID AEC07666.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 19698289) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 19698289) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 19698289) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" protein /gene="PKL" /locus_tag="AT2G25170" /gene_synonym="AT2G25170.1" /gene_synonym="CHD3" /gene_synonym="CHD3 PROTEIN" /gene_synonym="CHR6" /gene_synonym="CKH2" /gene_synonym="CYTOKININ-HYPERSENSITIVE 2" /gene_synonym="ENHANCED PHOTOMORPHOGENIC 1" /gene_synonym="EPP1" /gene_synonym="GYM" /gene_synonym="GYMNOS" /gene_synonym="PICKLE" /gene_synonym="SSL2" /gene_synonym="SUPPRESSOR OF SLR 2" /inference="Similar to RNA sequence, EST:INSD:EG431825.1,INSD:ES014631.1,INSD:AU229029.1, INSD:ES086888.1,INSD:ES068968.1,INSD:ES055320.1, INSD:EL085414.1,INSD:EL240933.1,INSD:EL976079.1, INSD:ES172239.1,INSD:EL109531.1,INSD:EL007452.1, INSD:ES160328.1,INSD:ES034037.1,INSD:ES102956.1, INSD:ES031185.1,INSD:EL205746.1,INSD:ES170620.1, INSD:AV551529.1,INSD:EL299286.1,INSD:EH798576.1, INSD:EH844611.1,INSD:EL331295.1,INSD:EG431824.1, INSD:EL142399.1,INSD:EL301892.1,INSD:EH851370.1, INSD:EH890842.1,INSD:EH939606.1,INSD:EH870984.1, INSD:EL134641.1,INSD:EL241273.1,INSD:EL228954.1, INSD:EL974955.1,INSD:ES007660.1,INSD:ES192990.1, INSD:ES103565.1,INSD:ES068848.1,INSD:EH848311.1, INSD:BP793236.1,INSD:ES103357.1,INSD:BP794175.1, INSD:ES164439.1" /inference="similar to RNA sequence, mRNA:INSD:AF185577.1" /note="PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink)." /db_xref="Araport:AT2G25170" /db_xref="TAIR:AT2G25170" intron_pos 48:0 (1/29) intron_pos 94:0 (2/29) intron_pos 145:2 (3/29) intron_pos 199:2 (4/29) intron_pos 271:1 (5/29) intron_pos 303:1 (6/29) intron_pos 349:0 (7/29) intron_pos 420:0 (8/29) intron_pos 456:0 (9/29) intron_pos 473:0 (10/29) intron_pos 506:1 (11/29) intron_pos 554:0 (12/29) intron_pos 588:2 (13/29) intron_pos 635:0 (14/29) intron_pos 691:2 (15/29) intron_pos 714:0 (16/29) intron_pos 755:0 (17/29) intron_pos 791:2 (18/29) intron_pos 819:0 (19/29) intron_pos 884:0 (20/29) intron_pos 933:1 (21/29) intron_pos 967:2 (22/29) intron_pos 992:2 (23/29) intron_pos 1014:1 (24/29) intron_pos 1040:0 (25/29) intron_pos 1083:2 (26/29) intron_pos 1197:0 (27/29) intron_pos 1241:1 (28/29) intron_pos 1266:0 (29/29) BEGIN 1 MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN 61 LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI DKILDCEMRP TKSSEQGSSD 121 AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED 181 DFVAIRPEWT TVDRILACRE EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV 241 NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM 301 GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV 361 IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS YEMINLDSAV LKPIKWECMI 421 VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ 481 EEFKDINQEE QISRLHKMLA PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT 541 RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL 601 DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK 661 NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ AMARAHRLGQ TNKVMIYRLI 721 NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG 781 KIHYDDAAID KLLDRDLVEA EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA 841 ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS 901 DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI 961 FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH IAEEIDENSP TFSDGVPKEG 1021 LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA 1081 VLKHGYGRWQ AIVDDKELGI QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ 1141 NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG 1201 SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA 1261 QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS INGNINTILS ITSDQSKSHE 1321 DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN 1381 MVVD //