LOCUS AEC07531.1 993 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA/RNA polymerases superfamily protein
protein.
ACCESSION CP002685-2933
PROTEIN_ID AEC07531.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="SCA3"
/locus_tag="AT2G24120"
/gene_synonym="F27D4.3"
/gene_synonym="F27D4_3"
/gene_synonym="PDE319"
/gene_synonym="PIGMENT DEFECTIVE 319"
/gene_synonym="SCABRA 3"
/inference="Similar to RNA sequence,
EST:INSD:ES068989.1,INSD:ES000932.1,INSD:EH842471.1,
INSD:EL998994.1,INSD:BP651558.1,INSD:BP656074.1,
INSD:BP812585.1,INSD:AV822903.1,INSD:AV546957.1,
INSD:BP654217.1,INSD:EL228027.1,INSD:ES058892.1,
INSD:EH935884.1,INSD:AV783772.1,INSD:AV528671.1,
INSD:AU230672.1,INSD:CF772943.1,INSD:EL279344.1,
INSD:N96123.1,INSD:BP842028.1,INSD:AU239373.1,
INSD:AW004269.1,INSD:BP655001.1,INSD:EG486354.1,
INSD:BP647611.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK229652.1,INSD:AK226316.1,INSD:Y08463.1"
/note="SCABRA 3 (SCA3); FUNCTIONS IN: DNA-directed RNA
polymerase activity, protein binding, DNA binding;
INVOLVED IN: transcription; LOCATED IN: mitochondrion;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed
RNA polymerase, bacteriophage type (InterPro:IPR002092);
BEST Arabidopsis thaliana protein match is: male
gametophyte defective 3 (TAIR:AT1G68990.1); Has 1315 Blast
hits to 1296 proteins in 334 species: Archae - 0; Bacteria
- 38; Metazoa - 134; Fungi - 224; Plants - 204; Viruses -
139; Other Eukaryotes - 576 (source: NCBI BLink)."
/db_xref="Araport:AT2G24120"
/db_xref="TAIR:AT2G24120"
intron_pos 283:0 (1/18)
intron_pos 346:0 (2/18)
intron_pos 390:2 (3/18)
intron_pos 414:0 (4/18)
intron_pos 433:2 (5/18)
intron_pos 473:0 (6/18)
intron_pos 511:0 (7/18)
intron_pos 555:0 (8/18)
intron_pos 694:0 (9/18)
intron_pos 711:0 (10/18)
intron_pos 734:2 (11/18)
intron_pos 763:0 (12/18)
intron_pos 814:0 (13/18)
intron_pos 839:0 (14/18)
intron_pos 869:0 (15/18)
intron_pos 885:0 (16/18)
intron_pos 923:1 (17/18)
intron_pos 958:0 (18/18)
BEGIN
1 MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS
61 SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK GASLIEELEN PVERNGLSGR
121 RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE
181 YRDLEKEMCE KNLAPNLPYV KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL
241 PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301 QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV
361 QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI ECDSLLLAGL DKSAKHMLIP
421 YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT
481 KWRVNRNILD VVERLWADGG NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR
541 ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601 GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA
661 EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL QHYAALGRDS FEAAAVNLVA
721 GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT
781 YVGAREQIKR RLEEKGVITD ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII
841 ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901 SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ
961 SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN
//