LOCUS AEC07500.1 477 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002685-2858
PROTEIN_ID AEC07500.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G23900"
/gene_synonym="T29E15.10"
/gene_synonym="T29E15_10"
/inference="Similar to RNA sequence,
EST:INSD:EG500452.1,INSD:EG502181.1,INSD:DR263355.1,
INSD:EG502180.1,INSD:DR263354.1,INSD:EG500456.1,
INSD:EG500457.1,INSD:EG500458.1,INSD:EG500455.1,
INSD:EG502183.1,INSD:EG502182.1,INSD:EG500453.1,
INSD:DR263353.1"
/inference="similar to RNA sequence,
mRNA:INSD:DQ446556.1,INSD:DQ653019.1"
/note="Pectin lyase-like superfamily protein; FUNCTIONS
IN: polygalacturonase activity; INVOLVED IN: carbohydrate
metabolic process; LOCATED IN: endomembrane system;
EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L
mature pollen stage, M germinated pollen stage, 4
anthesis, C globular stage, petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase
fold/virulence factor (InterPro:IPR011050), Glycoside
hydrolase, family 28 (InterPro:IPR000743), Pectin lyase
fold (InterPro:IPR012334), Parallel beta-helix repeat
(InterPro:IPR006626); BEST Arabidopsis thaliana protein
match is: Pectin lyase-like superfamily protein
(TAIR:AT3G48950.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G23900"
/db_xref="TAIR:AT2G23900"
intron_pos 12:0 (1/4)
intron_pos 126:0 (2/4)
intron_pos 166:1 (3/4)
intron_pos 249:1 (4/4)
BEGIN
1 MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE
61 FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW LTGSFNLTSH FTLFIQKGAT
121 ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV
181 KYRSGGFKGI TRPYTIEIIF SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS
241 PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301 AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW
361 MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL DGFKNDPFTK ICMSNIKIDL
421 AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA
//