LOCUS AEC07154.1 340 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana ubiquitin fusion degradation 1 protein.
ACCESSION CP002685-2395
PROTEIN_ID AEC07154.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="UFD1"
/locus_tag="AT2G21270"
/gene_synonym="F3K23.3"
/gene_synonym="F3K23_3"
/gene_synonym="ubiquitin fusion degradation 1"
/inference="Similar to RNA sequence,
EST:INSD:EH922923.1,INSD:ES206819.1,INSD:BP788001.1,
INSD:BP784721.1,INSD:ES169691.1,INSD:EL050522.1,
INSD:ES017731.1,INSD:EL109406.1,INSD:ES020140.1,
INSD:AV530806.1,INSD:CD532765.1,INSD:ES161227.1,
INSD:AV790473.1,INSD:ES014122.1,INSD:DR375340.1,
INSD:BP570536.1,INSD:BP610593.1,INSD:ES181949.1,
INSD:ES085168.1,INSD:BP779381.1,INSD:EL290461.1,
INSD:EL276456.1,INSD:EH830891.1,INSD:EL061266.1,
INSD:CF651793.1,INSD:EH923662.1,INSD:EL341234.1,
INSD:BP602667.1,INSD:EH877571.1,INSD:EL013369.1,
INSD:AA597474.1,INSD:BP808501.1,INSD:ES176320.1"
/note="ubiquitin fusion degradation 1 (UFD1); FUNCTIONS
IN: molecular_function unknown; INVOLVED IN:
ubiquitin-dependent protein catabolic process; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Ubiquitin fusion degradation protein UFD1
(InterPro:IPR004854); BEST Arabidopsis thaliana protein
match is: Ubiquitin fusion degradation UFD1 family protein
(TAIR:AT4G38930.2); Has 705 Blast hits to 703 proteins in
222 species: Archae - 8; Bacteria - 2; Metazoa - 165;
Fungi - 211; Plants - 127; Viruses - 0; Other Eukaryotes -
192 (source: NCBI BLink)."
/db_xref="Araport:AT2G21270"
/db_xref="TAIR:AT2G21270"
intron_pos 6:1 (1/9)
intron_pos 23:0 (2/9)
intron_pos 49:0 (3/9)
intron_pos 57:1 (4/9)
intron_pos 68:1 (5/9)
intron_pos 109:0 (6/9)
intron_pos 152:2 (7/9)
intron_pos 226:1 (8/9)
intron_pos 309:0 (9/9)
BEGIN
1 MVLRFCCHLL TYSVSLLPPI TMFFDGYHYH GTTFEQSYRC YPASFIDKPQ LESGDKIIMP
61 PSALDRLASL HIDYPMLFEL RNAGIERVTH CGVLEFIAEE GMIYMPYWMM QNLLLQEGDI
121 VRVRNVTLPK GTYVKLQPHT TDFLDISNPK AILETALRNY SCLTSGDSIM VPYNNKKYFI
181 DIVETKPANA ISIIETDCEV DFAPPLDYKE PERPTAPSAA KGPAKAEEVV DEPEPKFNPF
241 TGSGRRLDGR PLAYEPAPAS SSKGKQPVVA NGNGQSSVAS SSEKATRAQG KLVFGANGNR
301 APKEAAPKVG AAKETKKEEQ EKKDEPKFQA FSGKKYSLRG
//