LOCUS       AEC07154.1               340 aa    PRT              PLN 23-MAR-2023
DEFINITION  Arabidopsis thaliana ubiquitin fusion degradation 1 protein.
ACCESSION   CP002685-2395
PROTEIN_ID  AEC07154.1
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 19698289)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 19698289)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (bases 1 to 19698289)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
FEATURES             Qualifiers
     source          /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     protein         /gene="UFD1"
                     /locus_tag="AT2G21270"
                     /gene_synonym="F3K23.3"
                     /gene_synonym="F3K23_3"
                     /gene_synonym="ubiquitin fusion degradation 1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH922923.1,INSD:ES206819.1,INSD:BP788001.1,
                     INSD:BP784721.1,INSD:ES169691.1,INSD:EL050522.1,
                     INSD:ES017731.1,INSD:EL109406.1,INSD:ES020140.1,
                     INSD:AV530806.1,INSD:CD532765.1,INSD:ES161227.1,
                     INSD:AV790473.1,INSD:ES014122.1,INSD:DR375340.1,
                     INSD:BP570536.1,INSD:BP610593.1,INSD:ES181949.1,
                     INSD:ES085168.1,INSD:BP779381.1,INSD:EL290461.1,
                     INSD:EL276456.1,INSD:EH830891.1,INSD:EL061266.1,
                     INSD:CF651793.1,INSD:EH923662.1,INSD:EL341234.1,
                     INSD:BP602667.1,INSD:EH877571.1,INSD:EL013369.1,
                     INSD:AA597474.1,INSD:BP808501.1,INSD:ES176320.1"
                     /note="ubiquitin fusion degradation 1 (UFD1); FUNCTIONS
                     IN: molecular_function unknown; INVOLVED IN:
                     ubiquitin-dependent protein catabolic process; LOCATED IN:
                     endomembrane system; EXPRESSED IN: 24 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: Ubiquitin fusion degradation protein UFD1
                     (InterPro:IPR004854); BEST Arabidopsis thaliana protein
                     match is: Ubiquitin fusion degradation UFD1 family protein
                     (TAIR:AT4G38930.2); Has 705 Blast hits to 703 proteins in
                     222 species: Archae - 8; Bacteria - 2; Metazoa - 165;
                     Fungi - 211; Plants - 127; Viruses - 0; Other Eukaryotes -
                     192 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G21270"
                     /db_xref="TAIR:AT2G21270"
     intron_pos      6:1 (1/9)
     intron_pos      23:0 (2/9)
     intron_pos      49:0 (3/9)
     intron_pos      57:1 (4/9)
     intron_pos      68:1 (5/9)
     intron_pos      109:0 (6/9)
     intron_pos      152:2 (7/9)
     intron_pos      226:1 (8/9)
     intron_pos      309:0 (9/9)
BEGIN
        1 MVLRFCCHLL TYSVSLLPPI TMFFDGYHYH GTTFEQSYRC YPASFIDKPQ LESGDKIIMP
       61 PSALDRLASL HIDYPMLFEL RNAGIERVTH CGVLEFIAEE GMIYMPYWMM QNLLLQEGDI
      121 VRVRNVTLPK GTYVKLQPHT TDFLDISNPK AILETALRNY SCLTSGDSIM VPYNNKKYFI
      181 DIVETKPANA ISIIETDCEV DFAPPLDYKE PERPTAPSAA KGPAKAEEVV DEPEPKFNPF
      241 TGSGRRLDGR PLAYEPAPAS SSKGKQPVVA NGNGQSSVAS SSEKATRAQG KLVFGANGNR
      301 APKEAAPKVG AAKETKKEEQ EKKDEPKFQA FSGKKYSLRG
//