LOCUS AEC06978.1 407 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana phytochrome interacting factor 3-
like 5 protein.
ACCESSION CP002685-2156
PROTEIN_ID AEC06978.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="PIL5"
/locus_tag="AT2G20180"
/gene_synonym="PHY-INTERACTING FACTOR 1"
/gene_synonym="phytochrome interacting factor 3-like 5"
/gene_synonym="PIF1"
/gene_synonym="T2G17.2"
/gene_synonym="T2G17_2"
/inference="Similar to RNA sequence,
EST:INSD:AV821071.1,INSD:AU237330.1,INSD:DR749610.1,
INSD:AI999336.1,INSD:EL122370.1,INSD:AV796599.1,
INSD:EL131655.1,INSD:EL256111.1,INSD:EH859262.1,
INSD:EH952070.1,INSD:EH914218.1,INSD:ES024913.1,
INSD:BP633044.1,INSD:AU228370.1,INSD:EL072744.1,
INSD:AV820797.1,INSD:EH817544.1,INSD:EL317062.1,
INSD:EL322407.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX820799.1,INSD:AK228820.1,INSD:BT029775.1"
/note="phytochrome interacting factor 3-like 5 (PIL5);
CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding
domain (InterPro:IPR001092), Helix-loop-helix DNA-binding
(InterPro:IPR011598); BEST Arabidopsis thaliana protein
match is: basic helix-loop-helix (bHLH) DNA-binding
superfamily protein (TAIR:AT4G28800.1); Has 4635 Blast
hits to 4615 proteins in 348 species: Archae - 0; Bacteria
- 26; Metazoa - 878; Fungi - 251; Plants - 3376; Viruses -
2; Other Eukaryotes - 102 (source: NCBI BLink)."
/db_xref="Araport:AT2G20180"
/db_xref="TAIR:AT2G20180"
intron_pos 198:0 (1/5)
intron_pos 224:0 (2/5)
intron_pos 246:0 (3/5)
intron_pos 268:0 (4/5)
intron_pos 381:0 (5/5)
BEGIN
1 MDPQQQPSSD QNLFIQEDEM TSWLHYPLRD DDFCSDLLFS AAPTATATAT VSQVTAARPP
61 VSSTNESRPP VRNFMNFSRL RGDFNNGRGG ESGPLLSKAV VRESTQVSPS ATPSAAASES
121 GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK
181 RKEREATTTD ETESRSEETK QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI
241 PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301 PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG
361 YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED HGNHTTG
//