LOCUS AEC06956.1 701 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding CRS1 / YhbY (CRM) domain-
containing protein protein.
ACCESSION CP002685-2124
PROTEIN_ID AEC06956.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="CAF1"
/locus_tag="AT2G20020"
/gene_synonym="ATCAF1"
/gene_synonym="T2G17.18"
/gene_synonym="T2G17_18"
/inference="Similar to RNA sequence,
EST:INSD:AV810900.1,INSD:EH854256.1,INSD:EL134979.1,
INSD:BP663291.1,INSD:EH849634.1,INSD:EL104341.1,
INSD:BP789010.1,INSD:EG481140.1,INSD:BP788936.1,
INSD:AV811075.1,INSD:BP778859.1,INSD:AV784510.1,
INSD:BU635937.1,INSD:BP787941.1,INSD:AV792964.1,
INSD:BP780203.1,INSD:EH838639.1,INSD:AV823524.1,
INSD:BP788111.1,INSD:BP777391.1,INSD:EG481142.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT004337.1,INSD:BX819359.1,INSD:AY045882.1"
/note="CAF1; FUNCTIONS IN: RNA binding; INVOLVED IN: Group
II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain
(InterPro:IPR001890); BEST Arabidopsis thaliana protein
match is: RNA-binding CRS1 / YhbY (CRM) domain-containing
protein (TAIR:AT1G23400.1); Has 330 Blast hits to 282
proteins in 47 species: Archae - 0; Bacteria - 32; Metazoa
- 20; Fungi - 4; Plants - 265; Viruses - 0; Other
Eukaryotes - 9 (source: NCBI BLink)."
/db_xref="Araport:AT2G20020"
/db_xref="TAIR:AT2G20020"
intron_pos 265:1 (1/4)
intron_pos 308:0 (2/4)
intron_pos 383:1 (3/4)
intron_pos 426:0 (4/4)
BEGIN
1 MSLKLNTPFP IFAPSLFPNH NPRAPSEIRF SRWGNANAER FEQRRRSQEE LEAEIRRDRR
61 FDAATKIVHT HDSEAAAAEP KTSPFRSRGT PSLPSARSIP GRRSKYSKPD SGPNRPKNKP
121 RVPDSPPQLD AKPEVKLSED GLTYVINGAP FEFKYSYTET PKVKPLKLRE PAYAPFGPTT
181 MGRPWTGRAP LPQSQKTPRE FDSFRLPPVG KKGLKPVQKP GPFRPGVGPR YVYSKEEILG
241 EPLTKEEVRE LVTSCLKTTR QLNMGRDGLT HNMLNNIHDL WKRRRVCKIK CKGVCTVDMD
301 NVCEQLEEKI GGKVIYRRGG VLFLFRGRNY NHRTRPRFPL MLWKPVAPVY PRLIQQVPEG
361 LTRQEATNMR RKGRELMPIC KLGKNGVYCD LVKNVKEAFE VCELVRIDCQ GMKGSDFRKI
421 GAKLKDLVPC VLVSFENEQI LIWRGREWKS SLTTPDKKGD ILEDIEVDTA LPEDDEPSVS
481 PNQSQTMTQN PPLDSMELQN DPDGHDLSPS TVDSSEMEGT INSLQSWSTK DVTEPTVDSF
541 LRDLEEPEDE PETSEEISKQ SIERVLILMK QAVESGTALV LDAADLDADT VFSKAVAFSS
601 VASPGPVFQH GLRKQPTVKK QESQEFGYGD LEAKSSNVVV SRNASKSSNV VVFGKREVAE
661 RGEREEKEEG SKKKMDEFAE DYREVMPHGT LKVDELAKLL A
//