LOCUS AEC06725.1 824 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana PHD finger family protein / SWIB
complex BAF60b domain-containing protein / GYF domain-
containing protein protein.
ACCESSION CP002685-1820
PROTEIN_ID AEC06725.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G18090"
/gene_synonym="T27K22.4"
/gene_synonym="T27K22_4"
/inference="Similar to RNA sequence,
EST:INSD:BE526281.1,INSD:EL098455.1,INSD:EL313263.1,
INSD:DR363583.1,INSD:Z30786.1,INSD:EL068240.1,
INSD:BP794427.1,INSD:AV546996.1,INSD:AV558008.1,
INSD:EL191070.1,INSD:EG528198.1,INSD:BX837036.1,
INSD:ES068940.1,INSD:BX834216.1,INSD:EL204718.1,
INSD:EG528197.1,INSD:ES047053.1,INSD:CB258010.1,
INSD:ES052282.1,INSD:ES150290.1,INSD:EL989080.1,
INSD:EL262047.1,INSD:AV529179.1,INSD:ES079778.1,
INSD:AV523487.1,INSD:AV441149.2"
/inference="similar to RNA sequence, mRNA:INSD:AF370586.1"
/note="PHD finger family protein / SWIB complex BAF60b
domain-containing protein / GYF domain-containing protein;
FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN:
regulation of transcription, DNA-dependent; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type,
conserved site (InterPro:IPR019786), SWIB/MDM2 domain
(InterPro:IPR003121), Zinc finger, PHD-type
(InterPro:IPR001965), Zinc finger, FYVE/PHD-type
(InterPro:IPR011011), GYF (InterPro:IPR003169), Zinc
finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis
thaliana protein match is: DNA binding;zinc ion
binding;nucleic acid binding;nucleic acid binding
(TAIR:AT3G51120.1); Has 1270 Blast hits to 1121 proteins
in 190 species: Archae - 0; Bacteria - 166; Metazoa - 513;
Fungi - 60; Plants - 433; Viruses - 0; Other Eukaryotes -
98 (source: NCBI BLink)."
/db_xref="Araport:AT2G18090"
/db_xref="TAIR:AT2G18090"
intron_pos 97:2 (1/3)
intron_pos 124:1 (2/3)
intron_pos 187:0 (3/3)
BEGIN
1 MPEIDLMRVD HCVSDVKLDD SSSSPPGFFD GGGVPLDSDV KLDEEDSDSL KKRGRRGRPP
61 RILAKASSPP ISRKRREDED VCFVCFDGGS LVLCDRRGCP KAYHPACVKR TEAFFRSRSK
121 WNCGWHICTT CQKDSFYMCY TCPYSVCKRC VRSSEYVVVR ENKGFCGICM KTIMLIENAA
181 EANKEKVQVD FDDQGSWEYL FKIYWVSLKE KLGLSLDDLT KAKNPWKSSS STAAKRRTTS
241 RVHEKDDGNS PGVMKIRRAK VRKMDAVSVS NLGPSLDSNC SLGDRLPQLT SAATWATNEL
301 LDFVGYMKNG DISVLSKYDV QTLVLEYVRR NNLQNSPQNS EIMCDSKLMR LFGKERVDNL
361 EMLKLLDSHF IDQVRSPVTD NSAGGVTETM SYQVNAGRSC DRLNTSEQHQ EGESQQLNGH
421 SIQVRPSSSD SRNHAVVKPD TSATLSNKPI DGLDTNMVWL YGDPDGKIHG PFSLYNLRQW
481 NSSGHFPPEL RIWRLGEQQH SSILLTDALN GQFHKTGLLQ NHSIPKQEVT ATIANDQNRS
541 VAVPKIESRI LDFSPNSVCT DQSVISSSNS VITRSSDVSN KSGNNCSHAV PLDFSLSNER
601 DTVGFISLWD KRKVESSLLV QSPISCSLSL ATLPRNSNCS LPPHERWSAG QTDGNSAATT
661 ACNQNGSLSG SAEKQVTATV QSCGQNWNAA TPSSASNVWD SNSGLTSFPD NQEIDFLDLF
721 SPTFKFNFAS TTTDWQPIVA GPDECDESVS DLLAEVEAME SQKRLPSPTS TFRGPEELLI
781 RHSINDSFSP AEGHSPALDV SKGDSMSSTN DLQMHSRSNS TVHF
//