LOCUS AEC06653.1 134 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana high mobility group B4 protein.
ACCESSION CP002685-1722
PROTEIN_ID AEC06653.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="HMGB4"
/locus_tag="AT2G17560"
/gene_synonym="high mobility group B4"
/gene_synonym="MJB20.12"
/gene_synonym="MJB20_12"
/gene_synonym="NFD04"
/gene_synonym="NFD4"
/gene_synonym="NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR"
/gene_synonym="NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4"
/inference="Similar to RNA sequence,
EST:INSD:EL983872.1,INSD:BP630972.1,INSD:ES043423.1,
INSD:DR214088.1,INSD:ES100236.1,INSD:BP847270.1,
INSD:DR214072.1,INSD:DR214084.1,INSD:DR214069.1,
INSD:EL117953.1,INSD:ES200614.1,INSD:DR214057.1,
INSD:EH810027.1,INSD:ES035168.1,INSD:DR214055.1,
INSD:EL287001.1,INSD:DR244797.1,INSD:ES082419.1,
INSD:DR214078.1,INSD:DR214061.1,INSD:ES195880.1,
INSD:ES017483.1,INSD:DR214090.1,INSD:ES008295.1,
INSD:ES059731.1,INSD:DR214076.1,INSD:DR214071.1,
INSD:DR214062.1,INSD:EH975399.1,INSD:DR214083.1,
INSD:DR244793.1,INSD:DR214052.1,INSD:DR244796.1,
INSD:EH974941.1,INSD:ES036373.1,INSD:ES094215.1,
INSD:EL279056.1,INSD:EL983014.1,INSD:EL999605.1"
/note="high mobility group B4 (HMGB4); FUNCTIONS IN:
chromatin binding, structural constituent of chromatin,
DNA binding, sequence-specific DNA binding transcription
factor activity; INVOLVED IN: chromatin assembly or
disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: High mobility group, superfamily
(InterPro:IPR009071), High mobility group, HMG1/HMG2
(InterPro:IPR000910); BEST Arabidopsis thaliana protein
match is: high mobility group B5 (TAIR:AT4G35570.1); Has
4787 Blast hits to 4472 proteins in 564 species: Archae -
0; Bacteria - 0; Metazoa - 3477; Fungi - 337; Plants -
547; Viruses - 5; Other Eukaryotes - 421 (source: NCBI
BLink)."
/db_xref="Araport:AT2G17560"
/db_xref="TAIR:AT2G17560"
intron_pos 16:2 (1/6)
intron_pos 46:2 (2/6)
intron_pos 66:0 (3/6)
intron_pos 81:0 (4/6)
intron_pos 108:0 (5/6)
intron_pos 129:0 (6/6)
BEGIN
1 MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN
61 KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV QQYNLKLASG TNREEDDSDK
121 SKSEVDEAEA EDDD
//