LOCUS       AEC06653.1               134 aa    PRT              PLN 23-MAR-2023
DEFINITION  Arabidopsis thaliana high mobility group B4 protein.
ACCESSION   CP002685-1722
PROTEIN_ID  AEC06653.1
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 19698289)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 19698289)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (bases 1 to 19698289)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
FEATURES             Qualifiers
     source          /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     protein         /gene="HMGB4"
                     /locus_tag="AT2G17560"
                     /gene_synonym="high mobility group B4"
                     /gene_synonym="MJB20.12"
                     /gene_synonym="MJB20_12"
                     /gene_synonym="NFD04"
                     /gene_synonym="NFD4"
                     /gene_synonym="NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR"
                     /gene_synonym="NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL983872.1,INSD:BP630972.1,INSD:ES043423.1,
                     INSD:DR214088.1,INSD:ES100236.1,INSD:BP847270.1,
                     INSD:DR214072.1,INSD:DR214084.1,INSD:DR214069.1,
                     INSD:EL117953.1,INSD:ES200614.1,INSD:DR214057.1,
                     INSD:EH810027.1,INSD:ES035168.1,INSD:DR214055.1,
                     INSD:EL287001.1,INSD:DR244797.1,INSD:ES082419.1,
                     INSD:DR214078.1,INSD:DR214061.1,INSD:ES195880.1,
                     INSD:ES017483.1,INSD:DR214090.1,INSD:ES008295.1,
                     INSD:ES059731.1,INSD:DR214076.1,INSD:DR214071.1,
                     INSD:DR214062.1,INSD:EH975399.1,INSD:DR214083.1,
                     INSD:DR244793.1,INSD:DR214052.1,INSD:DR244796.1,
                     INSD:EH974941.1,INSD:ES036373.1,INSD:ES094215.1,
                     INSD:EL279056.1,INSD:EL983014.1,INSD:EL999605.1"
                     /note="high mobility group B4 (HMGB4); FUNCTIONS IN:
                     chromatin binding, structural constituent of chromatin,
                     DNA binding, sequence-specific DNA binding transcription
                     factor activity; INVOLVED IN: chromatin assembly or
                     disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant
                     structures; EXPRESSED DURING: 13 growth stages; CONTAINS
                     InterPro DOMAIN/s: High mobility group, superfamily
                     (InterPro:IPR009071), High mobility group, HMG1/HMG2
                     (InterPro:IPR000910); BEST Arabidopsis thaliana protein
                     match is: high mobility group B5 (TAIR:AT4G35570.1); Has
                     4787 Blast hits to 4472 proteins in 564 species: Archae -
                     0; Bacteria - 0; Metazoa - 3477; Fungi - 337; Plants -
                     547; Viruses - 5; Other Eukaryotes - 421 (source: NCBI
                     BLink)."
                     /db_xref="Araport:AT2G17560"
                     /db_xref="TAIR:AT2G17560"
     intron_pos      16:2 (1/6)
     intron_pos      46:2 (2/6)
     intron_pos      66:0 (3/6)
     intron_pos      81:0 (4/6)
     intron_pos      108:0 (5/6)
     intron_pos      129:0 (6/6)
BEGIN
        1 MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN
       61 KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV QQYNLKLASG TNREEDDSDK
      121 SKSEVDEAEA EDDD
//