LOCUS AEC06587.1 350 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana lysm domain GPI-anchored protein
2 precursor protein.
ACCESSION CP002685-1645
PROTEIN_ID AEC06587.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="LYM2"
/locus_tag="AT2G17120"
/gene_synonym="CEBiP-like 1"
/gene_synonym="CL-1"
/gene_synonym="F6P23.25"
/gene_synonym="F6P23_25"
/gene_synonym="LYP1"
/gene_synonym="lysm domain GPI-anchored protein 2
precursor"
/gene_synonym="lysM domain GPI-anchored protein 2
precursor"
/gene_synonym="LysM-containing receptor protein 1"
/inference="Similar to RNA sequence,
EST:INSD:BP577922.1,INSD:DR315516.1,INSD:ES151557.1,
INSD:DR315508.1,INSD:EH904388.1,INSD:DR304699.1,
INSD:BP595038.1,INSD:EH925976.1,INSD:AV563875.1,
INSD:DR315501.1,INSD:EH895170.1,INSD:EH809810.1,
INSD:CF773054.1,INSD:EL197379.1,INSD:DR315514.1,
INSD:DR315503.1,INSD:DR315504.1,INSD:DR315497.1,
INSD:DR315513.1,INSD:CF774420.1,INSD:EL042336.1,
INSD:BP640128.1,INSD:EH860765.1,INSD:DR315498.1,
INSD:AV539144.1,INSD:EL014114.1,INSD:EG480843.1,
INSD:AV522095.1,INSD:AV537598.1,INSD:AV540629.1,
INSD:BP782627.1,INSD:EL115348.1,INSD:AV559594.1,
INSD:EH827658.1,INSD:CF774012.1,INSD:DR315510.1,
INSD:DR315506.1,INSD:EG499666.1,INSD:DR370301.1,
INSD:BP561006.2,INSD:ES110791.1,INSD:EL970076.1,
INSD:BP607992.1,INSD:ES159157.1,INSD:EL220388.1,
INSD:BP635236.1,INSD:ES207681.1,INSD:DR315505.1,
INSD:BP862894.1,INSD:AV543269.1,INSD:EL254030.1,
INSD:AV551541.1,INSD:N65517.1,INSD:AI994958.1,
INSD:BE524221.1,INSD:DR315512.1,INSD:BP613862.1,
INSD:AU227051.1,INSD:EL134176.1,INSD:BP578953.1,
INSD:DR315507.1,INSD:AV784334.1,INSD:DR315509.1,
INSD:DR315499.1,INSD:EG480841.1,INSD:AV823563.1,
INSD:EL284669.1,INSD:EH989082.1,INSD:DR315515.1,
INSD:EH965003.1,INSD:BP605166.1,INSD:DR315502.1,
INSD:AV549577.1,INSD:DR370967.1,INSD:DR315496.1,
INSD:AV526192.1,INSD:H36005.1,INSD:EG520456.1,
INSD:BP634080.1,INSD:AI994228.1,INSD:EH898801.1,
INSD:DR315511.1,INSD:DR315500.1,INSD:ES156429.1,
INSD:AA651149.1,INSD:ES164371.1,INSD:EG527104.1,
INSD:AV550806.1,INSD:AV830612.1,INSD:ES016765.1,
INSD:DR315517.1,INSD:AV784559.1,INSD:BP577200.1,
INSD:AV526307.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF428464.1,INSD:AY056221.1,INSD:AY125560.1,
INSD:BX819139.1,INSD:AY088373.1"
/note="lysm domain GPI-anchored protein 2 precursor
(LYM2); FUNCTIONS IN: molecular_function unknown; INVOLVED
IN: cell wall macromolecule catabolic process; LOCATED IN:
anchored to plasma membrane, plasma membrane, anchored to
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Peptidoglycan-binding lysin domain (InterPro:IPR018392),
Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482);
BEST Arabidopsis thaliana protein match is: lysm domain
GPI-anchored protein 1 precursor (TAIR:AT1G21880.2); Has
636 Blast hits to 591 proteins in 145 species: Archae - 0;
Bacteria - 285; Metazoa - 0; Fungi - 0; Plants - 336;
Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink)."
/db_xref="Araport:AT2G17120"
/db_xref="TAIR:AT2G17120"
intron_pos 220:1 (1/3)
intron_pos 260:2 (2/3)
intron_pos 318:1 (3/3)
BEGIN
1 METSCFTLLG LLVSLSFFLT LSAQMTGNFN CSGSTSTCQS LVGYSSKNAT TLRNIQTLFA
61 VKNLRSILGA NNLPLNTSRD QRVNPNQVVR VPIHCSCSNG TGVSNRDIEY TIKKDDILSF
121 VATEIFGGLV TYEKISEVNK IPDPNKIEIG QKFWIPLPCS CDKLNGEDVV HYAHVVKLGS
181 SLGEIAAQFG TDNTTLAQLN GIIGDSQLLA DKPLDVPLKA CSSSVRKDSL DAPLLLSNNS
241 YVFTANNCVK CTCDALKNWT LSCQSSSEIK PSNWQTCPPF SQCDGALLNA SCRQPRDCVY
301 AGYSNQTIFT TASPACPDSA GPDNYASTLS SSFNFVIVLI QCALLCLCLL
//