LOCUS AEC06562.1 891 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana transportin 1 protein.
ACCESSION CP002685-1593
PROTEIN_ID AEC06562.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="TRN1"
/locus_tag="AT2G16950"
/gene_synonym="ATTRN1"
/gene_synonym="F12A24.13"
/gene_synonym="F12A24_13"
/gene_synonym="transportin 1"
/gene_synonym="TRANSPORTIN 1"
/inference="Similar to RNA sequence,
EST:INSD:BP811570.1,INSD:EH879800.1,INSD:BP621436.1,
INSD:BP607201.1,INSD:EL994555.1,INSD:BX837754.1,
INSD:BX837758.1,INSD:AV819005.1,INSD:ES018740.1,
INSD:AV547923.1,INSD:EL311145.1,INSD:BP609135.1,
INSD:AV825868.1,INSD:DR354896.1,INSD:AV517949.1,
INSD:AV792727.1,INSD:BX834641.1,INSD:AV550911.1,
INSD:EH984867.1,INSD:AV566559.1,INSD:EG496777.1,
INSD:DR363856.1,INSD:EH839664.1,INSD:AV540284.1,
INSD:AV804212.1,INSD:EL239875.1,INSD:EL979236.1,
INSD:AV806235.1,INSD:BP791541.1,INSD:EL196171.1,
INSD:EH915790.1,INSD:ES088633.1,INSD:EL987673.1,
INSD:AV524485.1,INSD:ES092692.1,INSD:ES001898.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT008804.1,INSD:BT002041.1"
/note="transportin 1 (TRN1); CONTAINS InterPro DOMAIN/s:
HEAT (InterPro:IPR000357), Importin-beta, N-terminal
(InterPro:IPR001494), Armadillo-like helical
(InterPro:IPR011989), Armadillo-type fold
(InterPro:IPR016024); BEST Arabidopsis thaliana protein
match is: ARM repeat superfamily protein
(TAIR:AT2G16960.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G16950"
/db_xref="TAIR:AT2G16950"
intron_pos 63:0 (1/28)
intron_pos 159:0 (2/28)
intron_pos 189:0 (3/28)
intron_pos 215:0 (4/28)
intron_pos 242:0 (5/28)
intron_pos 259:0 (6/28)
intron_pos 287:2 (7/28)
intron_pos 310:0 (8/28)
intron_pos 329:0 (9/28)
intron_pos 339:0 (10/28)
intron_pos 359:0 (11/28)
intron_pos 397:0 (12/28)
intron_pos 435:0 (13/28)
intron_pos 468:0 (14/28)
intron_pos 510:0 (15/28)
intron_pos 535:0 (16/28)
intron_pos 559:0 (17/28)
intron_pos 596:0 (18/28)
intron_pos 624:0 (19/28)
intron_pos 660:0 (20/28)
intron_pos 694:0 (21/28)
intron_pos 715:0 (22/28)
intron_pos 740:0 (23/28)
intron_pos 764:0 (24/28)
intron_pos 805:2 (25/28)
intron_pos 823:0 (26/28)
intron_pos 846:0 (27/28)
intron_pos 866:0 (28/28)
BEGIN
1 MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR
61 AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL PCLGAADRNI RTTVGTIISV
121 IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN
181 IFLPRLLQFF QSPHASLRKL ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK
241 LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301 KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD
361 DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS ASGDEAWKQR EAAVLALGAI
421 AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK
481 VLMGLLRRLL DTNKRVQEAA CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI
541 VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601 FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV
661 QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ PRLLDFLEIA SQQLSANLNR
721 ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL
781 AWIRPDLVAP HMDHFMKPWC MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA
841 IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
//