LOCUS AEC05899.1 536 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana CCCH-type zinc fingerfamily protein
with RNA-binding domain-containing protein protein.
ACCESSION CP002685-733
PROTEIN_ID AEC05899.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G05160"
/gene_synonym="F5G3.6"
/gene_synonym="F5G3_6"
/inference="Similar to RNA sequence,
EST:INSD:EG443547.1,INSD:EG443559.1,INSD:EG443556.1,
INSD:EG443544.1,INSD:EG443558.1,INSD:EG443546.1,
INSD:EG443549.1,INSD:EL216995.1,INSD:EG443545.1,
INSD:EG443548.1,INSD:DR354934.1,INSD:EG443557.1,
INSD:EG443551.1,INSD:EG443561.1,INSD:EG443555.1,
INSD:EG443560.1,INSD:EG443563.1,INSD:EG443550.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY429380.1,INSD:AY429381.1"
/note="CCCH-type zinc fingerfamily protein with
RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide
binding, zinc ion binding, nucleic acid binding; INVOLVED
IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 6 plant
structures; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA
recognition motif, RNP-1 (InterPro:IPR000504),
Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
BEST Arabidopsis thaliana protein match is: Zinc finger
(CCCH-type) family protein / RNA recognition motif
(RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast
hits to 218 proteins in 21 species: Archae - 0; Bacteria -
0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0;
Other Eukaryotes - 3 (source: NCBI BLink)."
/db_xref="Araport:AT2G05160"
/db_xref="TAIR:AT2G05160"
intron_pos 283:2 (1/4)
intron_pos 425:1 (2/4)
intron_pos 471:1 (3/4)
intron_pos 505:2 (4/4)
BEGIN
1 MNFTESMNVV HARIQQLEPE NAAKIFGYLL LMQENGNRDM IRLAFCPDSV MCSVINCVKY
61 ELARNSHHYH SPPSDHIPTP KFGSFTGSSP LSVSVSPPMK TGFWENSTEM DTLQNNLQFL
121 NFEDPLTSPE FSNGFFSQER QCLPLRTSRR SPSLPEFPVK ICHYFNKGFC KHGNNCRYFH
181 GQIIPERESF AQMFNPNNNL SDEEHVVSPV SLEKLEGEII ELLKLRRGAP ISIASLPMMY
241 YEKYGRTLQA EGYLTESQRH GKAGYSLTKL LARLKNTIRL VDRPHGQHSV ILAEDASKFV
301 EYTGERNEHG AILAGSRQIY LTFPAESSFT EHDVSIYFTS YGHVEDVRIP CQQKRMYGFV
361 TFASSETVKH ILAKGNPHFI CNARVLVKPY REKSRSSRYL DNYKPLHGMR YGSKFIERDI
421 EMNTLPPRVS ESSRMRKPFL SEPEQSVSKS LPTNYSYLGF SSDDFKLTSN AEQEEQAERL
481 SYLLDYLNTE DNVMNITTNY RDNDRRTHCE SLDSQVLNLP ESPFSSLSGK EISTVT
//