LOCUS X77196 1868 bp mRNA linear HUM 07-OCT-2008 DEFINITION H.sapiens mRNA for lysosome-associated membrane protein-2. ACCESSION X77196 VERSION X77196.1 KEYWORDS lysosome associated; membrane protein. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 AUTHORS Konecki D.S., Foetisch K., Schlotter M., Lichter-Konecki U. TITLE Complete cDNA sequence of human lysosome-associated membrane protein-2 JOURNAL Biochem. Biophys. Res. Commun. 205(1), 1-5(1994). PUBMED 7999007 REFERENCE 2 (bases 1 to 1868) AUTHORS Konecki D.S. JOURNAL Submitted (22-JAN-1994) to the INSDC. D.S. Konecki, Deutsche Krebsforschungszentrum, Im Neuenheimer Feld 280, Zimmer Nr 685b, 69120 Heidelberg, FRG FEATURES Location/Qualifiers source 1..1868 /db_xref="H-InvDB:HIT000323611" /organism="Homo sapiens" /chromosome="X" /map="Xq24" /isolate="patient D.S." /mol_type="mRNA" /clone_lib="lambda-1956" /clone="122A2, 104A2, 122B2, B25, B1, 104C2, 122B1, B34, B31, 122A1, B30, B28, B22, B24, B21, B4" /cell_type="hepatocyte" /tissue_type="liver" /db_xref="taxon:9606" mRNA join(1..201,202..320,321..534,535..693,694..878,879..1001, 1002..1065,1066..1230,1231..1868) prim_transcript 1..1868 exon 1..201 /number=1 CDS join(138..201,202..320,321..534,535..693,694..878, 879..1001,1002..1065,1066..1230,1231..1370) /product="lysosome-associated membrane protein-2" /db_xref="GOA:P13473" /db_xref="H-InvDB:HIT000323611.14" /db_xref="HGNC:HGNC:6501" /db_xref="InterPro:IPR002000" /db_xref="InterPro:IPR018134" /db_xref="PDB:2MOF" /db_xref="PDB:2MOM" /db_xref="UniProtKB/Swiss-Prot:P13473" /protein_id="CAA54416.1" /translation="MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYA KWQMNFTVRYETTNKTYKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANF TKAASTYSIDSVSFSYNTGDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLE KNDVVQHYWDVLVQAFVQNGTVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKP EAGTYSVNNGNDTCLLATMGLQLNITQDKVASVININPNTTHSTGSCRSHTALLRLNS STIKYLDFVFAVKNENRFYLKEVNISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKE QTVSVSGAFQINTFDLRVQPFNVTQGKYSTAQDCSADDDNFLVPIAVGAALAGVLILV LLAYFIGLKHHHAGYEQF" exon 202..320 /number=2 mat_peptide join(222..320,321..534,535..693,694..878,879..1001, 1002..1065,1066..1230,1231..1367) /product="lysosome-associated membrane protein-2" variation 294 /note="polymorphism (RsaI) and sequence difference C/T" exon 321..534 /number=3 misc_difference 469 /note="sequence difference T/A, resulting amino acid substitution I/N" exon 535..693 /number=4 exon 694..878 /number=5 misc_difference 795 /note="sequence difference G/C, resulting amino acid substitution A/P" misc_difference 838..839 /note="sequence difference TG/GT, resulting amino acid substitution L/R" exon 879..1001 /number=6 exon 1002..1065 /number=7 variation 1064 /note="polymorphism (Nla IV) and sequence difference C/T" exon 1066..1230 /number=8 exon 1231..1868 /number=9 regulatory 1520..1525 /regulatory_class="polyA_signal_sequence" misc_difference 1623..1624 /note="sequence difference -/G" misc_difference 1633..1634 /note="sequence difference -/G" misc_difference 1652 /note="sequence difference T/-" misc_difference 1658 /note="sequence difference T/-" misc_difference 1662 /note="sequence difference C/-" misc_difference 1672 /note="sequence difference G/-" regulatory 1703..1708 /regulatory_class="polyA_signal_sequence" regulatory 1735..1738 /regulatory_class="polyA_signal_sequence" misc_difference 1768 /note="sequence difference T/-" misc_difference 1773 /note="sequence difference G/C" misc_difference 1821 /note="sequence difference C/G" regulatory 1829..1834 /regulatory_class="polyA_signal_sequence" BASE COUNT 530 a 398 c 368 g 572 t ORIGIN 1 ccgattcctg gcttttgcaa ggctgtggtc ggtggtcatc agtgctcttg acccaggtcc 61 agcgagcctt ttccctggtg ttgcagctgt tgttgtaccg ccgccgtcgc cgccgtcgcc 121 gcctgctctg cggggtcatg gtgtgcttcc gcctcttccc ggttccgggc tcagggctcg 181 ttctggtctg cctagtcctg ggagctgtgc ggtcttatgc attggaactt aatttgacag 241 attcagaaaa tgccacttgc ctttatgcaa aatggcagat gaatttcaca gtacgctatg 301 aaactacaaa taaaacttat aaaactgtaa ccatttcaga ccatggcact gtgacatata 361 atggaagcat ttgtggggat gatcagaatg gtcccaaaat agcagtgcag ttcggacctg 421 gcttttcctg gattgcgaat tttaccaagg cagcatctac ttattcaatt gacagcgtct 481 cattttccta caacactggt gataacacaa catttcctga tgctgaagat aaaggaattc 541 ttactgttga tgaacttttg gccatcagaa ttccattgaa tgaccttttt agatgcaata 601 gtttatcaac tttggaaaag aatgatgttg tccaacacta ctgggatgtt cttgtacaag 661 cttttgtcca aaatggcaca gtgagcacaa atgagttcct gtgtgataaa gacaaaactt 721 caacagtggc acccaccata cacaccactg tgccatctcc tactacaaca cctactccaa 781 aggaaaaacc agaagctgga acctattcag ttaataatgg caatgatact tgtctgctgg 841 ctaccatggg gctgcagctg aacatcactc aggataaggt tgcttcagtt attaacatca 901 accccaatac aactcactcc acaggcagct gccgttctca cactgctcta cttagactca 961 atagcagcac cattaagtat ctagactttg tctttgctgt gaaaaatgaa aaccgatttt 1021 atctgaagga agtgaacatc agcatgtatt tggttaatgg ctccgttttc agcattgcaa 1081 ataacaatct cagctactgg gatgcccccc tgggaagttc ttatatgtgc aacaaagagc 1141 agactgtttc agtgtctgga gcatttcaga taaatacctt tgatctaagg gttcagcctt 1201 tcaatgtgac acaaggaaag tattctacag ctcaagactg cagtgcagat gacgacaact 1261 tccttgtgcc catagcggtg ggagctgcct tggcaggagt acttattcta gtgttgctgg 1321 cttattttat tggtctcaag caccatcatg ctggatatga gcaattttag aatctgcaac 1381 ctgattgatt atataaaaat acatgcaaat aacaagattt tcttacctct cagttgttga 1441 aacactttgc ttcttaaaat tgatatgttg aaactttaat tcttttatca atcccagcat 1501 tttgagatca gtctttatta ataaaacctg ttctctttaa tcagcttaaa atccaaagtg 1561 tcatatttac tggtcctgga gacaaacttg ttcaaaagaa catcaacgtg caatgtttta 1621 aggtctatct taagaagccc tggccaaatt ttgatcctaa ccttgaagta tgccttgaac 1681 ttattaacat ggccattata agaataaaat atgtagttgt gtcttaatgg aattaataaa 1741 tgtcatttca ctactggtgt tctgttttca atgtataagg actatagtga tttaaactca 1801 tcaatgtgcc tttgcataaa gttgattaaa taaatattga tgtggtataa atgcccatca 1861 gatatgct //