LOCUS       EF151143                 367 bp    mRNA    linear   HUM 22-FEB-2012
DEFINITION  Homo sapiens truncated PRDM1 isoform 2 (PRDM1) mRNA, complete cds.
ACCESSION   EF151143
VERSION     EF151143.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Staege,M.S., Banning-Eichenseer,U., Weissflog,G., Volkmer,I.,
            Burdach,S., Richter,G., Mauz-Korholz,C., Foll,J. and Korholz,D.
  TITLE     Gene expression profiles of Hodgkin's lymphoma cell lines with
            different sensitivity to cytotoxic drugs
  JOURNAL   Exp. Hematol. 36 (7), 886-896 (2008)
   PUBMED   18400362
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Staege,M.S., Volkmer,I. and Heins,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-NOV-2006) Children's Cancer Research Center,
            Martin-Luther-University Halle-Wittenberg, Ernst-Grube-Str. 40,
            Halle 06097, Germany
FEATURES             Location/Qualifiers
     source          1..367
                     /db_xref="H-InvDB:HIT000394955"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
                     /map="6q21-q22.1"
                     /cell_line="L-540"
                     /cell_type="Hodgkin's lymphoma"
                     /PCR_primers="fwd_seq: gtggtgggttaatcggtttg, rev_seq:
                     atagcgcatccagttgcttt"
     gene            1..367
                     /gene="PRDM1"
     CDS             88..135
                     /gene="PRDM1"
                     /note="PR domain containing 1 with ZNF domain isoform 2"
                     /codon_start=1
                     /product="truncated PRDM1 isoform 2"
                     /protein_id="ABL96617.1"
                     /translation="MEKVTDKSVPYLFPP"
     misc_feature    97..301
                     /gene="PRDM1"
                     /note="retained intron between exon 1b and exon 4"
     misc_feature    278..>367
                     /gene="PRDM1"
                     /note="alternative in-frame start codon"
BASE COUNT           95 a           71 c           83 g          118 t
ORIGIN      
        1 taatcggttt gaggcagctc cttaaatgaa catttgtgtt tcatttttct gttattttcc
       61 cgaacatgaa aagacgataa aactgaaatg gaaaaggtaa ctgacaaaag tgtgccttac
      121 ctgtttccgc cctgatttct gctgattcaa gactattctg gctaaactga ttggattctt
      181 tttctaacta ggcagtaggg gatcagaaat cacacacggt accggctgtg tttattctga
      241 gaggtgctgg ggagctttgg gtctgacttc cttttacatg cctgtcttct cttttggaca
      301 gatctattcc agaggggagc ttcaccactt cattgacggc tttaatgaag agaaaagcaa
      361 ctggatg
//