LOCUS EF151143 367 bp mRNA linear HUM 22-FEB-2012 DEFINITION Homo sapiens truncated PRDM1 isoform 2 (PRDM1) mRNA, complete cds. ACCESSION EF151143 VERSION EF151143.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 367) AUTHORS Staege,M.S., Banning-Eichenseer,U., Weissflog,G., Volkmer,I., Burdach,S., Richter,G., Mauz-Korholz,C., Foll,J. and Korholz,D. TITLE Gene expression profiles of Hodgkin's lymphoma cell lines with different sensitivity to cytotoxic drugs JOURNAL Exp. Hematol. 36 (7), 886-896 (2008) PUBMED 18400362 REFERENCE 2 (bases 1 to 367) AUTHORS Staege,M.S., Volkmer,I. and Heins,S. TITLE Direct Submission JOURNAL Submitted (28-NOV-2006) Children's Cancer Research Center, Martin-Luther-University Halle-Wittenberg, Ernst-Grube-Str. 40, Halle 06097, Germany FEATURES Location/Qualifiers source 1..367 /db_xref="H-InvDB:HIT000394955" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="6" /map="6q21-q22.1" /cell_line="L-540" /cell_type="Hodgkin's lymphoma" /PCR_primers="fwd_seq: gtggtgggttaatcggtttg, rev_seq: atagcgcatccagttgcttt" gene 1..367 /gene="PRDM1" CDS 88..135 /gene="PRDM1" /note="PR domain containing 1 with ZNF domain isoform 2" /codon_start=1 /product="truncated PRDM1 isoform 2" /protein_id="ABL96617.1" /translation="MEKVTDKSVPYLFPP" misc_feature 97..301 /gene="PRDM1" /note="retained intron between exon 1b and exon 4" misc_feature 278..>367 /gene="PRDM1" /note="alternative in-frame start codon" BASE COUNT 95 a 71 c 83 g 118 t ORIGIN 1 taatcggttt gaggcagctc cttaaatgaa catttgtgtt tcatttttct gttattttcc 61 cgaacatgaa aagacgataa aactgaaatg gaaaaggtaa ctgacaaaag tgtgccttac 121 ctgtttccgc cctgatttct gctgattcaa gactattctg gctaaactga ttggattctt 181 tttctaacta ggcagtaggg gatcagaaat cacacacggt accggctgtg tttattctga 241 gaggtgctgg ggagctttgg gtctgacttc cttttacatg cctgtcttct cttttggaca 301 gatctattcc agaggggagc ttcaccactt cattgacggc tttaatgaag agaaaagcaa 361 ctggatg //