LOCUS BG080396 654 bp mRNA linear EST 12-MAY-2010 DEFINITION H3053B08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3053B08 5', mRNA sequence. ACCESSION BG080396 VERSION BG080396.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 654) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080396.1. Other_ESTs: H3053B08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3053 row: B column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..654 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3053B08-5" /db_xref="taxon:10090" /clone="H3053B08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 175 a 139 c 165 g 175 t ORIGIN 1 cgcatcctgg gtgaaccggc tgtttctccc aacttgtaga aggggctgtg cttgggacaa 61 gggaaccttc ctacggaggc atagagagga aggctgaggc tccggggaag atcccaccgc 121 ggaaacgggt acaagagtgc gtcctttcct gtccttgtca gccccttggc ctttggattg 181 gcgtcaaaga tcagttgctc tttaaatatt taagccgcga tatgggcttg ctggacagac 241 tttcaggttt gcttggcctg aagaagaagg aggttcatgt tctgtgcctg gggctggata 301 acagtgggaa aaccacaatc attaacaagc tgaagccttc caacgctcaa tctcaagata 361 tagttccaac cataggattt agcatagaga aattcaagtc ctccagtttg tcttttacag 421 tgtttgacat gtcaggtcaa ggaaggtcca ggaatctctg ggaacactat tataaagatg 481 gacaagccat tatttttgtc attgatagta gtgataagtt aagaatggtt gtggccaaag 541 aagagcttga tacccttctg aatcacccag atattaagca ccgtcgaatt ccaatcttgt 601 tctttgcaaa cagaatggac cttagagact cagtgacctc tgtgaaagtg tctc //