LOCUS BC041590 2395 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens bromodomain containing 9, mRNA (cDNA clone MGC:52166
IMAGE:5428011), complete cds.
ACCESSION BC041590
VERSION BC041590.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2395)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2395)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: i Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57770649.
FEATURES Location/Qualifiers
source 1..2395
/db_xref="H-InvDB:HIT000052566"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52166 IMAGE:5428011"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2395
/gene="BRD9"
/gene_synonym="LAVS3040"
/gene_synonym="PRO9856"
/db_xref="GeneID:65980"
/db_xref="HGNC:HGNC:25818"
CDS 202..1647
/gene="BRD9"
/gene_synonym="LAVS3040"
/gene_synonym="PRO9856"
/codon_start=1
/product="bromodomain containing 9"
/protein_id="AAH41590.1"
/db_xref="GeneID:65980"
/db_xref="HGNC:HGNC:25818"
/translation="MKGYQSLVFNFFFLKLSAENESTPIQQLLEHFLRQLQRKDPHGF
FAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP
DTVYYKLAKKILHAGFKMMSKQAALLGNEDTAVEEPVPEVVPVQVETAKKSKKPSREV
ISCMFEPEGNACSLTDSTAEEHVLALVEHAADEARDRINRFLPGGKMGYLKRNGDGSL
LYSVVNTAEPDADEEETHPVDLSSLSSKLLPGFTTLGFKDERRNKVTFLSSATTALSM
QNNSVFGDLKSDEMELLYSAYGDETGVQCALSLQEFVKDAGSYSKKVVDDLLDQITGG
DHSRTLFQLKQRRNVPMKPPDEAKVGDTLGDSSSSVLEFMSMKSYPDVSVDISMLSSL
GKVKKELDPDDSHLNLDETTKLLQDLHEAQAERGGSRPSSNLSSLSNASERDQHHLGS
PSRLSVGEQPDVTHDPYEFLQSPEPAASAKT"
BASE COUNT 598 a 589 c 683 g 525 t
ORIGIN
1 ggaagagaag aagcggaagc gagagaggga gcactgtgac acggagggag aggctgacga
61 ctttgatcct gggaagaagg tggaggtgga gccgccccca gatcggccag tccgagcgtg
121 ccggacacag ccagttctcg gtggaactta aaatgctgtg agacaccaga cagacagata
181 ctgtgaactt ggagctctct aatgaaggga taccaaagtc ttgtattcaa tttttttttc
241 cttaaattgt cagccgaaaa tgagagcaca cctattcagc aactcctgga acacttcctc
301 cgccagcttc agagaaaaga tccccatgga ttttttgctt ttcctgtcac ggatgcaatt
361 gctcctggat attcaatgat aataaaacat cccatggatt ttggcaccat gaaagacaaa
421 attgtagcta atgaatacaa gtcagttacg gaatttaagg cagatttcaa gctgatgtgt
481 gataatgcaa tgacatacaa taggccagat accgtgtact acaagttggc gaagaagatc
541 cttcacgcag gctttaagat gatgagcaaa caggcagctc ttttgggcaa tgaagataca
601 gctgttgagg aacctgtccc tgaagttgta ccagtacaag tagaaactgc caagaaatcc
661 aaaaagccga gtagagaagt tatcagctgc atgtttgagc ctgaagggaa tgcctgcagc
721 ttgacggaca gtaccgcaga ggagcacgtg ctggcgctgg tggagcacgc agctgacgaa
781 gctcgggaca ggatcaaccg gttcctccca ggcggcaaga tgggctatct gaagaggaac
841 ggggacggga gcctgctcta cagcgtggtc aacacggccg agccggacgc tgatgaggag
901 gagacccacc cggtggactt gagctcgctc tccagtaagc tactcccagg cttcaccacg
961 ctgggcttca aagacgagag aagaaacaaa gtcacctttc tctccagtgc cactactgcg
1021 ctttcgatgc agaataattc agtatttggc gacttgaagt cggacgagat ggagctgctc
1081 tactcagcct acggagatga gacaggcgtg cagtgtgcgc tgagcctgca ggagtttgtg
1141 aaggatgctg ggagctacag caagaaagtg gtggacgacc tcctggacca gatcacaggc
1201 ggagaccact ctaggacgct cttccagctg aagcagagaa gaaatgttcc catgaagcct
1261 ccagatgaag ccaaggttgg ggacacccta ggagacagca gcagctctgt tctggagttc
1321 atgtcgatga agtcctatcc cgacgtttct gtggatatct ccatgctcag ctctctgggg
1381 aaggtgaaga aggagctgga ccctgacgac agccatttga acttggatga gacgacgaag
1441 ctcctgcagg acctgcacga agcacaggcg gagcgcggcg gctctcggcc gtcgtccaac
1501 ctcagctccc tgtccaacgc ctccgagagg gaccagcacc acctgggaag cccttctcgc
1561 ctgagtgtcg gggagcagcc agacgtcacc cacgacccct atgagtttct tcagtctcca
1621 gagcctgcgg cctctgccaa gacctaactc tagaccacct tcagctcttt tattttattt
1681 ttttagtttt attttgcacg tgtagagttt ttgtcatcag acaaggactt tgatcctgtc
1741 ccctttggca tgcgggaagc agccgcgggg aggtaatgaa ttgtctgtgg tatcatgtca
1801 gcagagtctc caagccccac gaaccctgag gagtggagtc atacgcgaag gccatatggc
1861 catcgtgtca gcagagagag tctctgtaca cagccccgtg aaccctgagg agtggagtca
1921 tacacgaagg gcgtgtggcc atcgtgtcag cagagagagt ctctgtacac agccccgtga
1981 accctgagga gtggagtcat acgcgaaggg tgtgtggcca ggctgcagag ctgcgtgccg
2041 tttgtgtccg agcatcacgt gtggctccag cccttgtttc tgccagtgta gacacctctg
2101 tctgccccac tgtcctgggg tcgctcttgg gaggcacagg catgggtgtg tctggcctca
2161 ttctgtatca gtccagtgtg ttcctgtcat agtttgtgtc tcccaggcag gccatggtag
2221 gggcctcgca ggggccattg gggagcacag ggccaggctg gggtgaggag agctcccctg
2281 ttttctgttt aattgatgag cctgggaaag gagtgtgttc tgcctgcccg ttacagtgga
2341 gcgttccgtg tccataaaac gttttctaac tgggaaaaaa aaaaaaaaaa aaaaa
//