LOCUS BC022518 2370 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens synaptoporin, mRNA (cDNA clone MGC:26651
IMAGE:4792167), complete cds.
ACCESSION BC022518
VERSION BC022518.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2370)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2370)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: a Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32401419.
FEATURES Location/Qualifiers
source 1..2370
/db_xref="H-InvDB:HIT000039597"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26651 IMAGE:4792167"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2370
/gene="SYNPR"
/gene_synonym="MGC26651"
/gene_synonym="SPO"
/db_xref="GeneID:132204"
/db_xref="HGNC:HGNC:16507"
CDS 119..916
/gene="SYNPR"
/gene_synonym="MGC26651"
/gene_synonym="SPO"
/codon_start=1
/product="synaptoporin"
/protein_id="AAH22518.1"
/db_xref="GeneID:132204"
/db_xref="HGNC:HGNC:16507"
/translation="MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIA
FAYPFRLHQVTFEVPTCEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIF
FQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQ
PSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKH
SSSYNQGGYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTSFTNQI"
BASE COUNT 678 a 429 c 465 g 798 t
ORIGIN
1 gcttcataaa aagagggaca agtggctggt gctgtggaca gagaagcttt atttttagta
61 tgagacaacc tctattttct ttcaggagag ggaagttgga ttatcaattc ttttgtaaat
121 gtgtatggtg atatttgctc cgctttttgc aatctttgca tttgcaacat gcggtggcta
181 ttctggaggc ctgcggctga gtgtggactg cgtcaacaag acagaaagta acctcagcat
241 cgacatagcg tttgcctacc cattcaggtt gcaccaggtg acgtttgagg tgcccacctg
301 cgagggaaag gaacggcaga agctggcatt gattggtgac tcctcgtctt cagcagagtt
361 cttcgtcact gttgctgtct tcgccttcct ctactctttg gctgccactg tcgtttacat
421 tttcttccag aacaaatacc gggaaaacaa ccggggccca ctcattgact tcattgtcac
481 tgtagtcttt tcgttcttgt ggttggtggg ttcatcagct tgggcaaaag gactgtctga
541 cgtcaaagtt gcaacggatc ccaaggaagt attgctacta atgtcagctt gcaaacagcc
601 atccaacaaa tgcatggcta tccacagccc tgttatgtca agcttaaaca cttctgtggt
661 ctttggattc ttgaacttta ttctctgggc tggaaacata tggtttgttt tcaaggagac
721 cggctggcat tcttcgggac agagatatct ttcagatcca atggagaagc actccagcag
781 ctataatcaa ggtggttaca accaagacag ctatggatca agcagtgggt acagtcagca
841 ggcgagtttg gggccaacct cagatgagtt tggccaacag cctactggcc ccacttcctt
901 taccaatcag atttaacaga gtagcatttg cattcttctg cagtcgcctc accatcttcc
961 atttcagtgg cagaagaatt ttttaagggt ttcaatcaat tattaatgca gagagtattg
1021 aatgtaaatc agagctctct agtcttcatt aaggcagcaa gtcctgggtt gtgaaaaatg
1081 atacttagag atgaggcgac atgaggagat atattattca tcatagatgg ctaattggag
1141 agtaccttgt tatatataca gatactttca tggtcatttt gtatgtatgt taaagtagta
1201 gaagtatttt gtagcttaaa gtctctagta tgtaatatgc ataaagtaaa tcaaatagcg
1261 ttgagttttc ttatgcattt tgatgtgaaa gatgttataa taatttctag aagacaattt
1321 ggtgtatcac aacatgcatg tcttattttt ttttagtttt aagtcctata ggactatgag
1381 tctctaagtt atttgtttca gaaaattatt ctttttttat gtgataaatc atatgattta
1441 agtgcatgaa taagcatttt ccaacacaat gaacatttga actgtgttta tgaaaatttt
1501 ctggtttgca ccatgaattt gtcaaatgga tatttatagg aatatattca ctactttgta
1561 tactttgcaa atttgtctct ctggctttac ccaagttctg aatgcattgt aattaaaatt
1621 taagtttttc ttttccccca ttagtaaaca tttagtgcta catatgataa ctgcccaata
1681 tttattctat ttacttagct aaatatttgc attcttgtaa ccttctatgg tgttttgtgg
1741 ctcttatctt gtggaccata aataacacgg cccaataact ctttgtgttt atggagtgtt
1801 gttttcttag aataatggag atgcagatat agataccata gtcaaggtac cgccttgctg
1861 aagtatttat ttataaagaa tattctgtag aacctctact accagctata tttttaaatc
1921 ctgtttattt gtaaagctaa tatgctcctc aatgtaatta ttaaaaattc tcaagtcaca
1981 gctaaactta ctaattctga ttttagtgta gcccctaaat taaaaatggc ttccatatgc
2041 cactctgtac cccaaagaga gttctcatga aatattctcc agaatgtatt cattatcaag
2101 aaaatgtcaa tcgtcacttc ctcgttttaa ctcagctgaa acaccaggac ccaatagaga
2161 gggcaagctg agcatctgta tttccagata aaagttgtta ttgatgtata aactcgttgc
2221 gtgattagtg atgttggaag cattttagca caaaacagcc ttgtgtctta gatgatatct
2281 gtaaccagtt tctgaatccc gttggataaa actgtattgt gatatctatt tgatgttaat
2341 aaagttattg catacaaaaa aaaaaaaaaa
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