LOCUS BC020062 3486 bp mRNA linear HUM 25-JAN-2007
DEFINITION Homo sapiens gem (nuclear organelle) associated protein 4, mRNA
(cDNA clone MGC:16993 IMAGE:4340940), complete cds.
ACCESSION BC020062
VERSION BC020062.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3486)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3486)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: i Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657121.
FEATURES Location/Qualifiers
source 1..3486
/db_xref="H-InvDB:HIT000038727"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16993 IMAGE:4340940"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3486
/gene="GEMIN4"
/gene_synonym="DKFZP434B131"
/gene_synonym="DKFZP434D174"
/gene_synonym="HC56"
/gene_synonym="HCAP1"
/gene_synonym="HHRF-1"
/gene_synonym="p97"
/db_xref="GeneID:50628"
/db_xref="HGNC:HGNC:15717"
/db_xref="MIM:606969"
CDS 50..3226
/gene="GEMIN4"
/gene_synonym="DKFZP434B131"
/gene_synonym="DKFZP434D174"
/gene_synonym="HC56"
/gene_synonym="HCAP1"
/gene_synonym="HHRF-1"
/gene_synonym="p97"
/codon_start=1
/product="gem (nuclear organelle) associated protein 4"
/protein_id="AAH20062.1"
/db_xref="GeneID:50628"
/db_xref="HGNC:HGNC:15717"
/db_xref="MIM:606969"
/translation="MDLGPLNICEEMTILHGGFLLAEQLFHPKALAELTKSDWERVGR
PIVEALREISSAAAHSQPFAWKKKALIIIWAKVLQPHPVTPSDTETRWQEDLFFSVGN
MIPTINHTILFELLKSLEASGLFIQLLMALPTTICHAELERFLEHVTVDTSAEDVAFF
LDVWWEVMKHKGHPQDPLLSQFSAMAHKYLPALDEFPHPPKRLRSDPDACPTMPLLAM
LLRGLTQIQSRILGPGRKCCALANLADMLTVFALTEDDPQEVSATVYLDKLATVISVW
NSDTQNPYHQQALAEKVKEAERDVSLTSLAKLPSETIFVGCEFLHHLLREWGEELQAV
LRSSQGTSYDSYRLCDSLTSFSQNATLYLNRTSLSKEDRQVVSELAECVRDFLRKTST
VLKNRALEDITASIAMAVIQQKMDRHMEVCYIFASEKKWAFSDEWVACLGSNRALFRE
PDLVLRLLETVIDVSTADRAIPESQIRQVIHLILECYADLSLPGKNKVLAGILRSWGR
KGLSEKLLAYVEGFQEDLNTTFNQLTQSASEQGLAKAVASVARLVIVHPEVTVKKMCS
LAVVNLGTHKFLGQILTAFPALRFVEEQGPNSSATFMVSCLKETVWMKFSTPKEEKQF
LELLNCLMSPVKPQGIPVAALLEPDEVLKEFVLPFLRLDVEEVDLSLRIFIQTLEANA
CREEYWLQTCSPFPLLFSLCQLLDRFSKYWQLPKEKRCLSLDRKDLAIHILELLCEIV
SANAETFSPDVWIKSLSWLHRKLEQLDWTVGLRLKSFFEGHFKCEVPATLFEICKLSE
DEWTSQAHPGYGAGTGLLAWMECCCVSSGISERMLSLLVVDVGNPEEVRLFSKGFLVA
LVQVMPWCSPQEWQRLHQLTRRLLEKQLLHVPYSLEYIQFVPLLNLKPFAQELQLSVL
FLRTFQFLCSHSCRNWLPLEGWNHVVKLLCGSLTRLLDSVRAIQAAGPWVQGPEQDLT
QEALFVYTQVFCHALHIMAMLHPEVCEPLYVLSIETLTCYETLSKTNPSVSSLRSRAH
EQRFLKSIAEGIGPEERRQTLLQKMSSF"
BASE COUNT 768 a 980 c 968 g 770 t
ORIGIN
1 ctcggagggg agggggcgtt agccccgcgc agccgccggc gtcgccgcca tggacctagg
61 acccttgaac atctgtgaag aaatgactat tctgcatgga ggcttcttgc tggccgagca
121 gctgttccac cctaaggcac tggcagaatt aacaaagtct gactgggaac gtgttggacg
181 gcccatcgtg gaggccttaa gggagatctc ctcggctgca gcacactccc agccctttgc
241 ctggaagaag aaagccctga tcatcatctg ggccaaggtt ctgcagccgc accccgtgac
301 cccgtccgac acagagacac ggtggcagga agacctgttc ttctcggtgg gcaacatgat
361 ccccaccatc aaccacacca tcctcttcga gctgctcaaa tccctggaag cttctggact
421 ctttatccag ctcctgatgg ccctgcccac caccatctgc catgcagaac tagagcgctt
481 tctggaacat gtgaccgttg acacttctgc cgaagacgtg gccttcttcc tggacgtctg
541 gtgggaggtg atgaagcaca agggtcaccc gcaggacccc ctgctctccc agtttagtgc
601 aatggcccat aagtacctgc ctgccttaga tgagttcccc catcctccaa agaggcttag
661 gtcagaccca gacgcgtgcc ccaccatgcc cctgttggcc atgctgctcc gcgggctgac
721 acagatccag agtcggatcc tgggcccggg gaggaagtgc tgtgcgctgg ccaacctggc
781 tgacatgctg actgtgtttg cgctgacaga ggacgacccc caggaggtgt ctgcaaccgt
841 gtatctggac aaactggcca cggtgatctc tgtgtggaac tcggacaccc agaatcccta
901 ccaccagcag gcgctggcag agaaggtgaa ggaggcagaa cgggatgtca gcctgacctc
961 gctggccaaa ctccccagtg agaccatttt cgtgggctgc gagttcctgc accacctgct
1021 gcgggagtgg ggggaggagt tgcaggccgt gctccgcagc agccagggga caagttacga
1081 cagctaccgg ctgtgcgaca gtctgacttc cttcagccag aacgcgacgc tctacctgaa
1141 ccgcaccagc ctgtccaagg aggacaggca ggtggtctct gagctggcgg agtgtgtcag
1201 ggacttcctg aggaaaacga gcacggtgct gaagaacagg gccttggagg atatcacagc
1261 ttccattgcc atggccgtca tccagcagaa gatggaccgc catatggaag tgtgctacat
1321 ttttgcctct gagaagaagt gggccttctc ggacgagtgg gtagcctgcc tggggagtaa
1381 cagggccctc ttccgagagc cagacttggt gttgaggctg ctggaaacag tgatagacgt
1441 cagcacagct gacagagcca tccctgagtc tcagatccgg caggtgatcc acctgatcct
1501 ggaatgttac gcagacctct ccctgccagg taaaaataaa gtccttgcag gtatcctgcg
1561 ttcctggggg cgaaagggcc tctctgaaaa gttgctggct tatgtggagg gttttcagga
1621 agacctcaat acaactttta accagctcac tcagagtgcc tccgaacagg gcttggcaaa
1681 agctgtggcc tccgtggccc gcctggtcat agtgcacccg gaagtcacgg tgaagaaaat
1741 gtgcagcctg gctgtggtca atctcggcac ccacaagttc ctgggccaga ttctcactgc
1801 cttccctgcc cttaggtttg tggaagagca gggtcccaat tcatctgcca ctttcatggt
1861 gtcatgcctc aaagaaaccg tctggatgaa gttctctaca cccaaggaag aaaagcaatt
1921 tttagagctc ctgaactgcc tgatgagtcc cgtgaaaccc caagggattc cagtggctgc
1981 tcttcttgag ccagacgagg tgctgaagga atttgtcctg cctttcttga ggttagatgt
2041 tgaagaggta gacctcagtc tgaggatctt catccagact ctagaggcaa acgcgtgccg
2101 agaggaatac tggctccaga cctgctcccc gtttccactc ctcttcagct tgtgccagct
2161 cttggaccgc ttcagcaaat actggcagct tcccaaggag aagcggtgcc tctctttgga
2221 taggaaggat ctagcgatcc atatcctgga gctcctgtgt gagattgtat cagccaatgc
2281 tgagaccttc tccccggatg tctggatcaa gtccctgtcc tggctccacc gcaagttaga
2341 acagctagac tggactgtgg gcctgaggct gaagagcttc ttcgaggggc acttcaagtg
2401 tgaagtgcca gccacacttt ttgagatctg taagctttca gaagacgagt ggacctccca
2461 ggcccaccca gggtacgggg ctggcacggg gctcctggcc tggatggagt gctgctgcgt
2521 ctccagcggc atctcggaga ggatgctgtc tctcttggtg gtggacgtgg gcaatcctga
2581 ggaggtcaga ctgttcagca aaggctttct ggtggccctg gtgcaagtca tgccttggtg
2641 cagccctcag gagtggcagc gccttcacca gctgaccagg agactgctgg agaagcagct
2701 cctccatgtc ccttatagcc tggaatatat tcagtttgtt cccctgctca acctgaagcc
2761 ctttgcccag gagttgcaac tctccgtcct cttcctgagg actttccagt ttctctgcag
2821 ccatagctgt cgtaattggc ttcctctgga aggctggaac cacgtggtca aactcctctg
2881 tggcagtctg acccgcctcc tggactcagt cagggcgata caggcagctg gcccttgggt
2941 tcaaggacca gagcaggacc tgacccagga agccctgttt gtttacaccc aggtgttctg
3001 ccatgctctg cacatcatgg ccatgctcca cccggaggtc tgtgagccac tctacgtttt
3061 aagtattgaa accctcacct gctatgagac tttgagcaag accaaccctt ctgtcagctc
3121 cttgcgttca agggcacacg agcagcgctt cttaaagtcc attgctgagg gcatcggccc
3181 tgaagaacgg cgccaaaccc tgttgcagaa gatgagcagc ttctgacttg gcgtggggag
3241 ctgggcccca acatggcggg tctgcagaag atcagcagct tcttacctgt gcgggagcga
3301 aaaagctggg cttcaacatg gcaggtctgt aggggtcaga cccgagcagc ctggacttta
3361 cagttatgtg aaactgtcca caaaacttca tggcaataat ggtgtaaaga aaatagtttc
3421 ttgggtattt gtaacgtaca aactatcata aaaattctcc tctttcgcaa aaaaaaaaaa
3481 aaaaaa
//