LOCUS BC003152 2019 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 1,
mRNA (cDNA clone MGC:4062 IMAGE:2958651), complete cds.
ACCESSION BC003152
VERSION BC003152.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2019)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2019)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC003152.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: p Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147669.
FEATURES Location/Qualifiers
source 1..2019
/db_xref="H-InvDB:HIT000031470"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4062 IMAGE:2958651"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2019
/gene="SLC39A1"
/gene_synonym="ZIP1"
/db_xref="GeneID:27173"
/db_xref="HGNC:HGNC:12876"
/db_xref="MIM:604740"
CDS 34..1008
/gene="SLC39A1"
/gene_synonym="ZIP1"
/codon_start=1
/product="solute carrier family 39 (zinc transporter),
member 1"
/protein_id="AAH03152.1"
/db_xref="GeneID:27173"
/db_xref="HGNC:HGNC:12876"
/db_xref="MIM:604740"
/translation="MGPWGEPELLVWRPESVASEPPVPVGLEVKLGALVLLLVLTLLC
SLVPICVLRRPGANHEGSASRQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAA
LHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPSPLEETRALLGTVNGGPQHWH
DGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHK
GILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLE
GMAAGTFLYITFLEILPQELASSEQRILKVILLLAGFALLTGLLFIQI"
BASE COUNT 425 a 539 c 588 g 467 t
ORIGIN
1 ggtctgagag tcactggagc taccagaagc atcatggggc cctggggaga gccagagctc
61 ctggtgtggc gccccgagtc ggtagcttca gagcctccag tgcctgtggg gctggaggtg
121 aagttggggg ccctggtgct gctgctggtg ctcaccctcc tctgcagcct ggtgcccatc
181 tgtgtgctgc gccggccagg agctaaccat gaaggctcag cttcccgcca gaaagccctg
241 agcctagtaa gctgtttcgc ggggggcgtc tttttggcca cttgtctcct ggacctgctg
301 cctgactacc tggctgccat agatgaggcc ctggcagcct tgcacgtgac gctccagttc
361 ccactgcaag agttcatcct ggccatgggc ttcttcctgg tcctggtgat ggagcagatc
421 acactggctt acaaggagca gtcagggccg tcacctctgg aggaaacaag ggctctgctg
481 ggaacagtga atggtgggcc gcagcattgg catgatgggc caggggtccc acaggcgagt
541 ggagccccag caaccccctc agccttgcgt gcctgtgtac tggtgttctc cctggccctc
601 cactccgtgt tcgaggggct ggcggtaggg ctgcagcgag accgggctcg ggccatggag
661 ctgtgcctgg ctttgctgct ccacaagggc atcctggctg tcagcctgtc cctgcggctg
721 ttgcagagcc accttagggc acaggtggtg gctggctgtg ggatcctctt ctcatgcatg
781 acacctctag gcatcgggct gggtgcagct ctggcagagt cggcaggacc tctgcaccag
841 ctggcccagt ctgtgctaga gggcatggca gctggcacct ttctctatat cacctttctg
901 gaaatcctgc cccaggagct ggccagttct gagcaaagga tcctcaaggt cattctgctc
961 ctagcaggct ttgccctgct cactggcctg ctcttcatcc aaatctaggg ggcttcaaga
1021 gaggggcagg ggagattgat gatcaggtgc ccctgttctc ccttccctcc cccagttgtg
1081 gggaatagga aggaaagggg aagggaaata ctgaggacca aaaagttctc tgggagctaa
1141 agatagagcc tttggggcta tctgactaat gagagggaag tgggcagaca agaggctggc
1201 cccagtccca aggaacaaga gatggtcaag tcgctagaga catatcaggg gacattagga
1261 ttggggaaga cacttgactg ctagaatcag aggttggaca ctatacataa ggacaggctc
1321 acatgggagg ctggaggtgg gtacccagct gctgtggaac gggtatggag aggtcataaa
1381 cctagagtca gtgtcctgtt ggtcctagcc catttcagca ccctgccact tggagtggac
1441 ccctcctact cttcttagcg cctaccctca tacctatctc cctcctccca tctcctaggg
1501 gactggcgcc aaatggtctc tccctgccaa ttttggtatc ttctctggcc tctccagtcc
1561 tgcttactcc tctattttta aagtgccaaa caaatcccct tcctctttct caaagcacag
1621 taatgtggca ctgagcccta cccagcacct cagtgaaggg ggcctgcttg ctctttattt
1681 tggtcccgga tcctggggtg gggcagaaat attttctggg ctggggtagg aggaaggttg
1741 ttgcagccat ctactgctgc tgtaccctag gaatatgggg acatggacat ggtgtcccat
1801 gcccagatga taaacactga gctgccaaaa cattttttta aatacacccg aggagcccaa
1861 gggggaaggg caatgcctac ccccagcgtt atttttgggg agggagggct gtgcataggg
1921 acatattctt tagaatctat tttattaact gacctgtttt gggacctgtt acccaaataa
1981 aagatgtttc tagaaaaaaa aaaaaaaaaa aaaaaaaaa
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