LOCUS AY574008 4548 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a1 (Pcdhga1) mRNA, complete
cds.
ACCESSION AY574008
VERSION AY574008.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4548)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4548)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4548)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4548)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4548
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4548
/gene="Pcdhga1"
CDS 1..2796
/gene="Pcdhga1"
/note="PCDHGA1; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a1"
/protein_id="AAT77590.1"
/translation="MAIPEKLTGWSLLMLLCLSLELLLEAGAGNIRYSVPEETDKGSF
VGSIAKDLGLETRELAERRIRIVSRGRSQLFSLNPRSGSLVTAGRIDREELCAQSVPC
VVSFNILMEDKVKLVPIEVEIIDINDNTPQFQLEELELKMSEITTPGTRIPLPLGQDL
DVGINSLQSYQLSANPHFFLDVQQGPDGPQQPEMVLQRPLDREKDAVHYLILTASDGG
NPIHSGTLQIHVQVVDVNDNPPAFTQAEYHVRVPENVPLGTRLLKVNASDPDEGANGR
VTYSFHNVDHSVVRKFQLDSYTGELSNKEPLDFEEYKVYPMEIQAQDGAGLMARAKVL
VTVLDVNDNAPEIGVTSVTTTIPENFPPGTIVALISVHDQDADDNGHTTCSIPGNLPF
KLEKLVDNYYRLVTERTLDREHSSRYNITITATDQGTPPLSTQAHISLLVTDINDNPP
VFEQDSYSVYIPENNPRGASIFSVKAQDADHNENALVTYALVEDTIQGVPLSSYFSIN
SDTGVVYALQSFDYEQFRDLQLRVMARDSGNPQLSSNVSLSLFMIDQNDNAPEILYPV
LPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNSWLSYRLLKASEPGLFSVGLHTG
EVRTARALLDRDALKQSLVVAVQDHGQPPLSTTVTFTIAVADNIPDLLADLGSIGTPA
DPQDSDLTLYLVVAVAVVSCIFLAFVIVLLVLKLRHWHSSRLLQTAANGLTDLPTSNF
VGVDGVHAFLQTYSHEISLTADSRKSHLIFPQPNYADTLISQESCEKKEFLSAPQSLL
EDKEEIFSQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASAS
EAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
PAGGNGNKKKSGKKEKK"
BASE COUNT 1123 a 1267 c 1109 g 1049 t
ORIGIN
1 atggcgattc cagagaagct aaccggttgg agcctgctga tgctgctgtg cctttctctg
61 gagctactgt tggaagctgg ggctggaaac atccgatact ccgtgccaga agaaaccgac
121 aaaggctcct tcgtgggcag catcgccaag gacctgggac tggaaacccg ggagctggcg
181 gagcgcagga tccgcatcgt ctccagaggt aggtcgcagc ttttctccct gaacccgcga
241 agcggcagct tggtcaccgc gggcaggata gaccgggaag agctgtgcgc tcagagcgtg
301 ccgtgtgtcg tgagctttaa catccttatg gaggataaag taaagcttgt ccctatcgaa
361 gtagagataa ttgatatcaa tgacaacact ccccaattcc agttagaaga gctagaatta
421 aaaatgagtg aaataacgac cccaggtacc aggatccctt tgcctctcgg gcaagacctg
481 gatgtgggta taaattcact tcagagctac cagctaagcg ccaaccctca cttcttcctg
541 gatgtgcaac agggacctga tggaccacaa cagccggaga tggtactgca gagacctcta
601 gacagagaaa aagatgctgt tcattacctg atcctcactg cctctgatgg gggcaaccca
661 atacattcag ggactttgca aattcatgtt caggtggtag atgtgaacga caacccacca
721 gcatttactc aggcagagta tcacgtgaga gtccctgaga acgttccatt aggcactcgg
781 cttctcaagg tgaatgcctc tgacccggat gagggagcta atggcagagt aacctactcc
841 tttcacaatg tagaccacag cgtggtccgg aaatttcagt tggattctta cacaggagaa
901 ctatcgaata aagaaccact agactttgaa gaatacaaag tttatccaat ggaaattcaa
961 gctcaggatg gtgctggact catggccaga gcgaaggtgc tggtcactgt tttggatgtt
1021 aatgataatg ccccagaaat tggagtcacg tctgtaacta ccacaatacc agaaaacttt
1081 cctcctggga ccatagttgc tctcatcagt gtgcatgatc aagacgctga tgacaatggt
1141 cacaccactt gttccattcc tggcaaccta ccctttaaac tggaaaagtt agtggacaat
1201 tattaccgct tagtaacaga aagaacactg gacagagaac atagctctag gtacaacatc
1261 acaataacag caacagatca gggaactcca cccctatcta cccaggctca catctcactg
1321 ctagtgacag atatcaatga caaccctcca gttttcgaac aggactccta ttctgtctac
1381 atccctgaaa acaaccccag aggggcttcc atcttctcag taaaggccca ggatgctgac
1441 cacaatgaga atgctctagt gacttacgcc ctggtggaag acactattca gggagtacct
1501 ttgtcttctt atttctccat caactctgac actggagttg tctatgcact gcaatccttt
1561 gactatgagc agtttcgaga tttgcagcta agagtgatgg cccgtgatag tgggaaccca
1621 caactcagca gcaatgtatc tctgagtcta ttcatgatag atcagaatga caacgcccca
1681 gagatcctgt accctgtcct ccccactgat ggctccactg gtgtggagct agcacctcga
1741 tctgccgagc ccggttacct ggtgaccaag gtagtagcag tagacaaaga ctcaggacag
1801 aactcctggc tgtcctaccg tctgctcaaa gccagcgagc cagggctctt ctcggtgggg
1861 ctgcacacag gtgaggtacg cacagctcgg gccctgctgg acagagatgc tctcaaacag
1921 agcctggtgg tggctgtgca ggaccacggc cagcctcctc tgtccaccac agtcacattt
1981 actatagcag tggctgacaa catccctgac ctcctggctg acctgggcag cattgggacc
2041 cctgctgacc cccaggattc agatctcaca ctctacctgg tggtggcagt ggccgtagtc
2101 tcctgcatct tcctagcctt tgtaatagtg ctcttggtgc tcaagctgcg acattggcac
2161 tcctcacgct tgctccagac tgcagcaaat ggactgactg acctgcccac ctccaacttt
2221 gtaggtgttg atggggtaca tgcatttcta cagacctatt cccatgagat ctcactcact
2281 gctgactctc gtaagagcca cttgatcttc ccgcaaccca actacgcaga cacactcatc
2341 agccaagaga gctgtgagaa aaaagaattt ctgtcagcac cacagtctct gcttgaagat
2401 aaagaggaaa tattttctca gcaagccccg cccaacactg actggcgttt ctctcaagcc
2461 cagagacccg gcacgagcgg atcccaaaat ggggatgaaa ccggcacctg gcccaacaac
2521 cagttcgata cagagatgct gcaagccatg atcttggcct ctgccagtga agccgctgat
2581 gggagctcca ctctgggagg gggcactggc actatgggtt tgagcgctcg atatggaccc
2641 cagtttaccc tgcagcacgt gcctgactac cgccagaacg tgtacatccc tggcagcaat
2701 gccacactga ccaacgcagc tggcaaacga gatggcaagg ctccggcagg cggcaatggc
2761 aacaagaaga agtcgggcaa gaaagagaag aagtaatatg gaggccaggc cttgagccac
2821 agggcagcct ccctccccag ccagtccagc ttgtccttac ttgtacccag gcctcagaat
2881 ttcagggctc accccaggat tctggtagga gccacagcca ggccatgctc cccgttggga
2941 aacagaaaca agtgcccaag ccaacacccc ctctttgtac cctagggggg ttgaatatgc
3001 aaagagagtt ctgctgggac cccctatcca atcagtgatt gtacccacat aggtagcagg
3061 gttagtgtgg atacacacac acacacacac acacacacac acacacacac aaacaccatg
3121 ccacactccc ctagttacag ctgaactccc catcttccaa cccagtcagg ctcattcatc
3181 tccagcctcc ctctccccac cccacccttt cagtcaacac cctctctttg agccaggtag
3241 ttgggctgtt ggggtgacag gtgagctaag ggggctccta gttctgaaca ggtgggagag
3301 tattacaatc ctttggcctc tccttcagtt cagctgtccc ccaaagcatg gtttggtacc
3361 agtcttctca tttcctccta gagcctgaga ccaatgctta agttttgggg aacagtcacc
3421 atgcccctgg tactgatgat gcttgctgga tttttgggaa ggcattttgc tactaagcct
3481 cttttcaatg cctggggact accagtcttc tgttctccat tgtttgatgt tcccactgca
3541 tgctgtgact tcctactcct caaagaagag actcctttgc atgtctggag acagtagggg
3601 gtggtaaact aaagggaagc tgagtgtata ctgctgggag tgggggcagt ggacaaaaca
3661 gcctgttaat agggtcttgc aaggggctct gtacgtaccc agggtactgg ctcaatcctc
3721 aaattctagc catagacaaa catcaggcca gacccctccc tcctggttca gcctgggcag
3781 cttgggctga gccaccagga ccaatggatt taagctgaca tttcagtcca agaagacttc
3841 taagtgagtt taagaccaga gaggaaagag gggcctctgt gggtgctggg tactccagag
3901 gtgcccttgg tgggagggtc agtggtccta gcaggaaggg agcccagcaa ggtcattctt
3961 ggaccctggg tctagtccgg tagctagaac aagggaccaa gtggctataa agtctcagcc
4021 aatgatgagg cttttcccct gggcctctgg gcccctgtat tcctcaagcc cctggcctcc
4081 accttaccag gtgccatttc tcagaaggcc actgcccagg cccccaggcc gccccctcgt
4141 ggccacagac cggttaaagc cccccagtgc ctccttgtgc atagaacttc ctctgcccga
4201 gcccttacag tagtgtagaa gcccccttcc tcctcccgct ggtgtagaat agccaatagt
4261 atagtgtggt gtgcttttac gtgatggcga gtgggcagcg ggcggtgggc tgtgcgcagc
4321 cgtctgtcct ttgaatctca atctgcctgc gcggccagtg ctgtgttttg tgctgtgtcc
4381 acacgctgcg gcgacccctc cctgtactga cttctctata aaagcttctc ttcgcatagt
4441 cacgtagctc ctgcccatcc cccttccgat atctctcgca agttttatac tctaatattt
4501 atatggcttt tttcttcgaa aattaaaaat aaaaaatggt ttcttctg
//