LOCUS AK303104 1950 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ57245 complete cds, highly similar to
Double-stranded RNA-binding protein Staufen homolog 2.
ACCESSION AK303104
VERSION AK303104.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1950)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1950
/clone="THYMU2006823"
/clone_lib="THYMU2"
/db_xref="H-InvDB:HIT000497728"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thymus"
CDS 276..1790
/codon_start=1
/note="highly similar to Double-stranded RNA-binding
protein Staufen homolog 2"
/protein_id="BAH13900.1"
/transl_table=1
/translation="MKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYV
QLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANK
SEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRA
ATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEK
EPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTN
LQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGY
LSPKDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQP
SKQLEYLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQAALSAL
KQFSEQGLDPIDGAMNIEKGSLEKQAKHLREKADNNQAPPGSIAQDCKKSNSAV"
BASE COUNT 648 a 412 c 426 g 464 t
ORIGIN
1 agttctctgt agtgtttgcc aatgttggag ccgtctgcaa agtgtccccg gcaagaagag
61 gctgcctacc acaaggactt tagcttactt tttaaagatt gaagaaaaaa aagaagacag
121 aaaaagaaga actcaaagat acacaaagta atttgaacca aggctcagaa gtttttggag
181 ccgtgaggga tacagcagtt tggtcaatat tgtcttaaca tgcttcaaat aaatcaggca
241 gtataactcc aactgtggaa ctgaatgggc ttgctatgaa aaggggagag cctgccatct
301 acaggccatt agatccaaag ccattcccaa attatagagc taattacaac tttcggggca
361 tgtacaatca gaggtatcat tgcccagtgc ctaagatctt ttatgttcag ctcactgtag
421 gaaataatga attttttggg gaaggaaaga ctcgacaagc tgctagacac aatgctgcaa
481 tgaaagccct ccaagcactg cagaatgaac ctattccaga aagatctcct cagaatggtg
541 aatcaggaaa ggatatggat gatgacaaag atgcaaataa gtctgagatc agcttagtgt
601 ttgaaattgc tctgaagcga aatatgcctg tcagttttga ggttattaaa gaaagtggac
661 caccacatat gaaaagcttt gttactcgag tgtcagtagg agagttctct gcagaaggag
721 aaggaaatag caaaaaactc tccaagaagc gcgctgcgac caccgtctta caggagctta
781 aaaaacttcc acctcttcct gtggtggaaa agccaaaact attttttaaa aaacgcccta
841 aaacaatagt aaaggccgga ccagaatatg gccaagggat gaaccctatt agccgcctgg
901 cgcaaattca acaggccaaa aaggaaaagg agccggatta tgttttgctt tcagaaagag
961 gaatgcctcg acgtcgagaa tttgtgatgc aggtgaaggt aggcaatgaa gttgctacag
1021 gaacaggacc taataaaaag atagccaaaa aaaatgctgc agaagcaatg ctgttacaac
1081 ttggttataa agcatccact aatcttcagg atcaacttga gaagacaggg gaaaacaaag
1141 gatggagtgg tccaaagcct gggtttcctg aaccaacaaa taatactcca aaaggaattc
1201 ttcatttgtc tcctgatgtt tatcaagaga tggaagccag ccgccacaaa gtaatctctg
1261 gcactactct aggctatttg tcacccaaag atatgaacca accttcaagc tctttcttca
1321 gtatatctcc cacatcgaat agttcagcta caattgccag ggaactcctt atgaatggaa
1381 catcttctac agctgaagcc ataggtttaa aaggaagttc tcctactccc ccttgttctc
1441 cagtacaacc ttcaaaacaa ctggaatatt tagcaaggat tcaaggcttt caggttcact
1501 actgtgatag acaaagtggc aaagagtgtg tgacctgtct gacattagcc cctgtgcaga
1561 tgactttcca tgctattgga agctccattg aagccagcca tgatcaggca gccttaagtg
1621 ccttgaaaca attttctgaa caaggactgg atccaatcga tggagcaatg aatatcgaaa
1681 aaggttctct tgaaaaacaa gccaagcatc tgagagagaa agcggacaat aaccaggcac
1741 ccccgggctc catcgctcag gactgcaaga aatcaaactc ggccgtctag cagctcccag
1801 aacccgcggc tgccaccgca tccttataaa cctgtcagca cgcatgaggg tgtctgtgtt
1861 cagggaaatg aatgactaat accattattt gagtcttatg tgaagacaac actattctaa
1921 cacgagagat aatatacatg gtactgttta
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