LOCUS AK140021 2953 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male corpora quadrigemina cDNA, RIKEN
full-length enriched library, clone:B230040B06 product:Annexin
V-binding protein (ABP-10) (Fragment) homolog [Rattus norvegicus],
full insert sequence.
ACCESSION AK140021
VERSION AK140021.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2953)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B230040B06
FEATURES Location/Qualifiers
source 1..2953
/clone="B230040B06"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:B230040B06"
/db_xref="MGI:3545297"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="corpora quadrigemina"
CDS 77..>2953
/codon_start=1
/note="Annexin V-binding protein (ABP-10) (Fragment)
homolog [Rattus norvegicus] (UniProt|P70489, evidence:
FASTY, 87.8%ID, 95.3%length, match=1422)"
/note="putative"
/protein_id="BAE24214.1"
/transl_table=1
/translation="MSDETELHSSEKGETEESVRKQGQQTKLSSDDRTERKSKHKSER
RLSVLGRDGKPVSEYTIKTDEHARKDNKKEKHLSSEKSKAEHKSRRSSDSKLQKDALS
SKQHSVTSQKRSERCSEDKCETDSTNADSSFKPEELHHKERRRTKSLLEDKVVSKSKS
KGQSKQTKAAETEAQEGVTRQVTTPKPDKEKNTEDNDTERQRKFKLEDRTSEETVTDP
ALENTVSSAHSAQKDSGHRAKLASIKEKHKTDKDSTSSKLERKVSDGHRSRSLKHSNK
DMKKKEENKPDDKNGKEVDSSHEKGRGNGPVTEKKLSRRLCENRRGSTSQEMAKEDKL
VANMSGTTSSSSLQRPKKSTETTSIPEQEPMEIDSEAAVENVSELSKTEDISSNSSQQ
DTDFENVTKHKATAGVLKDEFRTSMVDSKPAAAVTCKSGRGLAVTSISERHADHKSTL
TKKVHSQGNPSKAAPREREPIQRGAQEVSVDSEVSRKALSRAPSENEKGQKNLKGMSK
TTEECGTHRNASLEYSTDSDLLSSSGSVTVVPQKESHNSNTIPVIDREAISEGGRAST
SLANHSDVPNQYSTVKKSEVHKTNGSKEGNDGFTVDMPTKANGGSKRHLSEDSQATLL
YSKESKISIPLADKSMSVTGDNKNINKQRSLMGTAKRESDLKVNPDIKQDSAAGEHVV
DLSTRKEAETVRRKHNKEIPTDVERKTENSEVDTSARRDSAPVPQQRHGKMERGAAGS
GRRDKAFIATSTEGTDKGIMLNTVKTGDATTTSSEVGEKGTALPCTSIEADEGFMMGA
CPKKHPLQVGAEASECTVFAAAEEGKGVVTEGFAESEILLTSSKEGESGECAVAESED
RVAGPLAAHTVQAEANVNSITTEEKDDAVTSAGSEEKCGGSACTVEGTATFIGEVESD
GAVTSAGTEIRAGSLSSEDVDGSQENRIQVGPKKETEGTVTCTET"
BASE COUNT 1088 a 565 c 742 g 558 t
ORIGIN
1 gcctgagaaa gagaaagctc aatcagaaga caagccatcg tcaaaacaca aacacaaagg
61 tgacagtgtg cataaaatga gcgacgagac tgaacttcac tcttctgaga agggcgaaac
121 agaggaaagt gttcggaagc aaggtcaaca aacgaaactt tcttcagatg atagaactga
181 acgtaaaagt aaacacaaga gtgaaaggag actgtcagta ttgggtagag atgggaagcc
241 agtttctgaa tacactataa aaacagatga gcatgcacgt aaagataaca aaaaggagaa
301 gcacctgtcg tctgaaaaat ccaaggctga gcacaaatca agaaggtcaa gtgactctaa
361 acttcagaaa gatgctctaa gctccaagca gcacagtgta acctcgcaga aaagaagcga
421 gagatgttct gaagataagt gtgagacaga ctccactaac gccgatagca gcttcaaacc
481 agaagagctt catcataagg agaggcgacg aacgaagagc ttgttagaag ataaggttgt
541 gtcaaaatct aaatcaaaag gtcaaagcaa acaaaccaag gctgctgaaa cagaagcaca
601 ggaaggtgtc acaagacagg tgacaactcc aaagcctgat aaagagaaaa acacagaaga
661 caatgacaca gaaaggcagc gcaagttcaa acttgaagac agaacttctg aagaaactgt
721 cactgaccct gcattagaga atactgtatc ttcagcacat agtgcgcaga aggactctgg
781 gcacagagct aagttagcat caattaaaga gaaacataag acagataaag actcaacctc
841 ctctaaactt gagaggaagg tctcagacgg gcacagaagc agaagcttaa agcatagtaa
901 taaagacatg aaaaagaaag aagaaaataa gccagatgac aagaatggta aagaagttga
961 cagcagtcat gaaaagggca gagggaatgg cccagtcaca gaaaaaaaac taagtagaag
1021 gctgtgtgaa aaccgaagag gaagcacgtc acaggaaatg gccaaggaag ataagttagt
1081 agcaaacatg tcaggcacta ccagtagttc ctctctgcag agaccaaaaa aaagcacaga
1141 aaccacatcg atccctgaac aagagccaat ggaaattgat tctgaggctg ctgttgaaaa
1201 tgtgtctgaa ctttctaaaa ctgaggacat cagtagtaac agttctcagc aagacactga
1261 ctttgaaaat gttacaaaac ataaagccac tgctggagtt ttaaaggatg agttcagaac
1321 ttccatggta gattcaaaac cagcagcagc tgtgacatgt aaatcagggc gtggactagc
1381 agtaacgagc atttctgaaa ggcatgctga ccataaaagc accttgacca agaaagtaca
1441 tagccaaggt aacccatcaa aagcagctcc tagggaaaga gagccaattc agcgaggagc
1501 ccaggaagta agtgtagact ctgaagtgag tcggaaagca ctctctaggg ccccatcaga
1561 aaacgagaag gggcagaaga atttgaaagg catgtccaaa actaccgagg aatgtggcac
1621 tcacagaaat gcttctcttg aatactctac agactcagac ctcttgtcat cctcaggctc
1681 tgtgactgtt gttcctcaga aagaatctca caattctaat acaattcctg taattgacag
1741 agaagccata tcagaaggcg gcagagccag tacctccctt gcaaatcatt ctgatgtccc
1801 taaccaatat tcgactgtta agaagtcaga agtacataaa acaaatggca gcaaagaagg
1861 taatgatggc ttcacagtgg atatgccaac aaaagcaaat ggcggtagca aaaggcatct
1921 ttctgaagat agccaggcca cattgctgta cagtaaagaa agcaaaataa gcatacctct
1981 tgctgacaag tcaatgagtg tgactgggga caataagaac attaacaaac aaaggagcct
2041 gatgggcaca gccaagagag agagtgatct gaaagtaaat cctgatataa agcaagacag
2101 tgctgcaggc gagcatgtcg tagacctgag tacaagaaag gaggctgaga cagtcagacg
2161 taagcataat aaagaaatac caactgatgt tgaaaggaag actgaaaaca gtgaagtaga
2221 caccagtgct aggcgcgatt ctgctcctgt gccacagcaa aggcacggga aaatggagag
2281 gggggcagct ggatctggta gacgagacaa agcttttatt gctactagta ctgaagggac
2341 ggacaaaggc atcatgttaa acacagtcaa gactggagat gccaccacca cttcatcaga
2401 agtgggagag aaggggacag ccttaccttg caccagtatt gaggcggacg aaggcttcat
2461 gatgggtgct tgccctaaaa aacatcccct ccaggttggg gcagaagcca gtgaatgcac
2521 tgtttttgct gcagctgaag agggtaaggg tgttgtcaca gaaggatttg ctgaaagtga
2581 gattttgctt acaagctcca aggaaggaga aagtggagaa tgtgctgtgg ctgagtcaga
2641 agacagagta gcaggtccct tggctgctca tacagttcaa gctgaagcca atgtgaacag
2701 tattacaaca gaggaaaaag acgatgcagt aaccagtgca ggctctgagg aaaagtgtgg
2761 tggatctgca tgtacagttg aggggacggc tacttttatt ggtgaagttg aaagtgatgg
2821 agctgttaca agtgctggaa cggaaataag agcaggatct ctgagcagtg aagatgttga
2881 tgggtcccaa gaaaatagga tacaagttgg tcctaaaaaa gaaacagaag gcactgtgac
2941 atgtactgaa acc
//