LOCUS LC269869 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ76. ACCESSION LC269869 VERSION LC269869.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ76" /isolate="09GH.NJ76" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66836.1" /transl_table=1 /translation="PQITLWQRPLVPVKIGGQLIEALLDTGADDTVLEEIDLPGKWKP KMIGGIGGFIKVRQYDQVLIEISGRKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEEKISKIGPENPYNTPIF AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE IVIYQYMDDLYVGSDLEIGQHRAKIKELREHLLRWGFTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPNKEVWTVNDIQKLVGKLNW" BASE COUNT 437 a 178 c 229 g 251 t ORIGIN 1 cctcaaatca ctctttggca acgaccctta gtcccagtaa aaataggggg acagctaata 61 gaagccctat tagatacagg agcagatgac acagtattag aagaaataga tttaccagga 121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcagtatgat 181 caagtactta tagaaattag tggaagaaag gctataggga cagtattagt aggacctaca 241 cctatcaaca taattgggag aaatatgttg actcagattg gctgtacttt aaactttcca 301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagggtt 361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagaaatg 421 gaaaaggaag aaaaaatttc aaaaattggg cctgaaaatc catacaacac tccaatattt 481 gccataaaga aaaaagacag tactaaatgg agaaaattgg tagatttcag agaactcaat 541 aaaaggactc aagacttctg ggaggtccaa ttagggatac ctcaccccgc ggggttaaaa 601 aaaaaaaaat cagtaacagt attagatgtg ggagatgcat acttttcagt tcccttagat 661 gaaagcttta gaaagtatac tgcatttact atacctagta gaaacaatga gacaccagga 721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc aatatttcag 781 agtagcatga caaaaatctt agagcccttt agagcaaaaa acccagaaat agtgatctac 841 caatacatgg atgatttata tgtaggatct gacttagaaa tagggcagca tagagcaaag 901 ataaaggagt taagagaaca tttattaaga tggggattta ccacaccaga taaaaaacat 961 caaaaggaac ctccattcct ttggatggga tatgagctcc atcctgacaa atggacggta 1021 caacctatac agctgccaaa caaggaagtc tggactgtca atgatataca aaagttagtg 1081 ggaaaactaa attgg //