LOCUS       LC269869                1095 bp    RNA     linear   VRL 09-NOV-2017
DEFINITION  Human immunodeficiency virus 1 pol gene for pol protein, partial
            cds, isolate: 09GH.NJ76.
ACCESSION   LC269869
VERSION     LC269869.1
KEYWORDS    .
SOURCE      Human immunodeficiency virus 1
  ORGANISM  Human immunodeficiency virus 1
            Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
            Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases.
            Contact:Nicholas Israel Nii-Trebi
            University of Ghana School of Biomedical and Allied Health
            Sciences, Medical Laboratory Sciences; Accra, Ghana
            URL    :http://chs.ug.edu.gh/
REFERENCE   2
  AUTHORS   Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S.,
            Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and
            Ampofo,W.K.
  TITLE     Dynamic HIV-1 genetic recombination and genotypic drug resistance
            among treatment-experienced adults in northern Ghana
  JOURNAL   J. Med. Microbiol. 66, 1663-1672 (2017)
  REMARK    DOI:10.1099/jmm.0.000621
COMMENT     
FEATURES             Location/Qualifiers
     source          1..1095
                     /collection_date="2009-02-20"
                     /country="Ghana:Tamale"
                     /db_xref="taxon:11676"
                     /host="Homo sapiens subject #NJ76"
                     /isolate="09GH.NJ76"
                     /isolation_source="plasma"
                     /mol_type="genomic RNA"
                     /organism="Human immunodeficiency virus 1"
     CDS             <1..>1095
                     /codon_start=1
                     /gene="pol"
                     /product="pol protein"
                     /protein_id="BBA66836.1"
                     /transl_table=1
                     /translation="PQITLWQRPLVPVKIGGQLIEALLDTGADDTVLEEIDLPGKWKP
                     KMIGGIGGFIKVRQYDQVLIEISGRKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS
                     PIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEEKISKIGPENPYNTPIF
                     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
                     LDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
                     IVIYQYMDDLYVGSDLEIGQHRAKIKELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
                     PDKWTVQPIQLPNKEVWTVNDIQKLVGKLNW"
BASE COUNT          437 a          178 c          229 g          251 t
ORIGIN      
        1 cctcaaatca ctctttggca acgaccctta gtcccagtaa aaataggggg acagctaata
       61 gaagccctat tagatacagg agcagatgac acagtattag aagaaataga tttaccagga
      121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcagtatgat
      181 caagtactta tagaaattag tggaagaaag gctataggga cagtattagt aggacctaca
      241 cctatcaaca taattgggag aaatatgttg actcagattg gctgtacttt aaactttcca
      301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagggtt
      361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagaaatg
      421 gaaaaggaag aaaaaatttc aaaaattggg cctgaaaatc catacaacac tccaatattt
      481 gccataaaga aaaaagacag tactaaatgg agaaaattgg tagatttcag agaactcaat
      541 aaaaggactc aagacttctg ggaggtccaa ttagggatac ctcaccccgc ggggttaaaa
      601 aaaaaaaaat cagtaacagt attagatgtg ggagatgcat acttttcagt tcccttagat
      661 gaaagcttta gaaagtatac tgcatttact atacctagta gaaacaatga gacaccagga
      721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc aatatttcag
      781 agtagcatga caaaaatctt agagcccttt agagcaaaaa acccagaaat agtgatctac
      841 caatacatgg atgatttata tgtaggatct gacttagaaa tagggcagca tagagcaaag
      901 ataaaggagt taagagaaca tttattaaga tggggattta ccacaccaga taaaaaacat
      961 caaaaggaac ctccattcct ttggatggga tatgagctcc atcctgacaa atggacggta
     1021 caacctatac agctgccaaa caaggaagtc tggactgtca atgatataca aaagttagtg
     1081 ggaaaactaa attgg
//