LOCUS LC269862 1095 bp RNA linear VRL 09-NOV-2017
DEFINITION Human immunodeficiency virus 1 pol gene for truncated pol protein,
partial cds, isolate: 09GH.NJ34.
ACCESSION LC269862
VERSION LC269862.1
KEYWORDS .
SOURCE Human immunodeficiency virus 1
ORGANISM Human immunodeficiency virus 1
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE 1 (bases 1 to 1095)
AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K.
TITLE Direct Submission
JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases.
Contact:Nicholas Israel Nii-Trebi
University of Ghana School of Biomedical and Allied Health
Sciences, Medical Laboratory Sciences; Accra, Ghana
URL :http://chs.ug.edu.gh/
REFERENCE 2
AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S.,
Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and
Ampofo,W.K.
TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance
among treatment-experienced adults in northern Ghana
JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017)
REMARK DOI:10.1099/jmm.0.000621
COMMENT
FEATURES Location/Qualifiers
source 1..1095
/collection_date="2009-02-20"
/country="Ghana:Tamale"
/db_xref="taxon:11676"
/host="Homo sapiens subject #NJ34"
/isolate="09GH.NJ34"
/isolation_source="plasma"
/mol_type="genomic RNA"
/organism="Human immunodeficiency virus 1"
CDS <1..126
/codon_start=1
/gene="pol"
/note="Truncated pol protein due to a premature stop
codon"
/product="truncated pol protein"
/protein_id="BBA66829.1"
/transl_table=1
/translation="PQITLWQRPVISVRIEGKLIEALLDTXADDTVLEEINLPGK"
BASE COUNT 433 a 169 c 224 g 259 t
ORIGIN
1 cctcaaatca ctctttggca acgaccagta atctcagtaa gaatagaggg aaagctaata
61 gaagccctat tagacacagr agcagatgat acagtattag aagaaataaa tttaccagga
121 aaatgaaaac caaaaatgat agggggaatt gaaggtttta ttaaagtaag acagtatgat
181 cagatactta taaaaatttg tgaaaaaaag gcaataggta cagtattagt agggcctaca
241 cctgtcaaca taattgggcg aaacatgttg actcaaattg gttgtacatt aaattttcca
301 attagtccta ttgaaactgt gccagtaaaa ttaargccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagagatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgagaatc catacaatac tccagtattt
481 gctataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agarcttaat
541 aagagaactc aagacttctg ggargtycaa ttaggaatac ctcaycccgc aggattaaaa
601 aagaayaaat cagtaacaat actagatgtg ggggatgcat atttttcagt tcccttggat
661 gaggatttta gaaagtatac agcattcacc atacctagta caaataatga aacaccaggg
721 attagatatc agtataatgt gctgccacaa ggatggaaag gatcaccagc aatttttcag
781 gcaagcatga caaaaatctt acagcctttt agaacagaaa atccagagat ggtgatctat
841 caatatgtgg atgayttata tgtaggatca gatttagaga tagggcagca tagagcaaaa
901 atagagaagc tgagagagca tctactgaga tggggattta ccacaccaga caaaaarcat
961 caraaagaac ctccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc
1021 cagcctatac aactgccaaa taaagactgc tggactgtca atgatataca gaagttagtg
1081 ggaaaactaa attgg
//