LOCUS       JX289966                 550 bp    DNA     linear   VRL 15-SEP-2012
DEFINITION  HIV-1 isolate UK1-BR-4 from United Kingdom nef protein (nef) gene,
            partial cds.
ACCESSION   JX289966
VERSION     JX289966.1
KEYWORDS    .
SOURCE      Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1
            Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
            Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S., Gorry,P. and Churchill,M.J.
  TITLE     Reduced basal transcriptional activity of central nervous
            system-derived HIV-1 long terminal repeats
  JOURNAL   AIDS Res. Hum. Retroviruses (2012) In press
   PUBMED   22924643
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S.L., Gorry,P.R. and Churchill,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85
            Commercial Road, Melbourne, Victoria 3004, Australia
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Human immunodeficiency virus 1"
                     /proviral
                     /mol_type="genomic DNA"
                     /isolate="UK1-BR-4"
                     /host="Homo sapiens"
                     /db_xref="taxon:11676"
                     /country="United Kingdom"
     repeat_region   <1..>550
                     /note="3' long terminal repeat"
                     /rpt_type=long_terminal_repeat
     gene            <1..332
                     /gene="nef"
     CDS             <1..332
                     /gene="nef"
                     /codon_start=3
                     /product="nef protein"
                     /protein_id="AFR45948.1"
                     /translation="EGLVYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGW
                     CFKLVPIDPDEVEKANEGENNKLLHPMSLHGMDDPEKEVLIWKFDSHLAFHHVARELH
                     PEYYKDC"
BASE COUNT          144 a          135 c          148 g          123 t
ORIGIN      
        1 tggaagggct agtttactcc cagaaaagac aagacatcct tgatctgtgg gtctaccaca
       61 cacaaggcta cttccctgat tggcagaact acacaccagg gccagggacc agatatccac
      121 tgacctttgg atggtgcttc aagctagtac caattgaccc agacgaggta gaaaaggcca
      181 atgaaggaga aaacaacaag ctgttacacc ctatgagcct gcatgggatg gatgacccag
      241 agaaagaagt gttaatatgg aagtttgaca gccacctagc atttcatcac gtggcccgag
      301 agctgcatcc ggagtactac aaggactgct gacatcgaac tttctacaag ggactttccg
      361 ctggggactt tccaaggagg cgtggcctgg gcgggactgg ggagtggcga gccctcagat
      421 gctgcatata agcagctgct ttttgcctgt actgggtctc tctggttaga tcagatctga
      481 gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct
      541 tgagtgcttc
//