LOCUS HO362552 957 bp mRNA linear EST 20-JAN-2012
DEFINITION chaetospheridium_74953.1_c10416_c Chaetosphaeridium globosum EST
library Chaetosphaeridium globosum cDNA 5', mRNA sequence.
ACCESSION HO362552
VERSION HO362552.1
DBLINK BioSample: SAMN00169694
KEYWORDS EST.
SOURCE Chaetosphaeridium globosum
ORGANISM Chaetosphaeridium globosum
Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae;
Coleochaetales; Chaetosphaeridiaceae; Chaetosphaeridium.
REFERENCE 1 (bases 1 to 957)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..957
/organism="Chaetosphaeridium globosum"
/mol_type="mRNA"
/strain="SAG 26.98"
/db_xref="taxon:96477"
/clone_lib="SAMN00169694 Chaetosphaeridium globosum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 273 a 207 c 221 g 250 t
ORIGIN
1 tattgccggt ttggtcaagg gtgcatccca aggtcttggt atgggtaacg ctttcttgtc
61 caacattcgt gccgtcgacg gtatcttcca cgtcgtccgn gtttttcgaa gacgaggctg
121 ttatgcacgt tgagaactca gtcgatcccg ttcgtgatct cgaaattatt agcgtacgag
181 ttgttgcaaa aggacattga aattatgacc tcacacattg aacctattcg ccgtgttcgc
241 caaggccgat aagaccaagc gcggagaatt ggacattgct gagaagatct tcaactggtt
301 gagcgttgag aagaaggaaa ttcgtctcgg taactggaac gctaaagaaa ttgagtattt
361 gaacacactc caattgttga ctgccaagcc tgttatctac ttgttgaata tgagcgaaga
421 agactttgct cgccaaaaga acaaattttt ggtcaagatc aaggcttgga tcgargcycg
481 cagcaaggac ccgatcattc cttactctgc cgccctcgaa cttactttgt tcaagatgag
541 ccccgaagac caaatcaagt actgcaatga caacaaggtg cgaagcatgt tgcccaagat
601 catcactact ggttacaaca tgttgcactt gatcactttc ttcacttgcg gtgctgatga
661 agttaaggct tggaccgtgc acaaaggtgc aaaggcccct caagccgccg gtactattca
721 cagcgacttt gaaaagttct tcattcaagc tgaaattcaa gcatacgctg actttaaaga
781 attgggttct gaagccgctg ttagaaacgc tggtaaattg aagaccgctg gtaaagaaca
841 cattgtacaa gacggtgata ttattttctt caagcacgct gctggtggtg caagcaaaaa
901 gaaataaaat tgcttcaagg agggtgtatc aacaytttgc aaacrattac rataaag
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