LOCUS FX985377 2599 bp mRNA linear TSA 19-APR-2017
DEFINITION TSA: Reticulitermes speratus calpain2D mRNA for putative calpain 2
isoform D, complete cds, contig: comp788807_c1_seq27.
ACCESSION FX985377
VERSION FX985377.1
DBLINK BioProject:PRJDB3531
Sequence Read Archive:DRR030795, DRR030796, DRR030797, DRR030798,
DRR030799, DRR030800, DRR030801, DRR030802, DRR030803, DRR030804,
DRR030805, DRR030806, DRR030807, DRR030808, DRR030809, DRR030810,
DRR030811, DRR030812, DRR030813, DRR030814, DRR030815, DRR030816,
DRR030817, DRR030818, DRR030819, DRR030820, DRR030821, DRR030822,
DRR030823, DRR030824, DRR030825, DRR030826, DRR030827, DRR030828,
DRR030829, DRR030830, DRR030831, DRR030832, DRR030833, DRR030834,
DRR030835, DRR030836, DRR030837, DRR030838, DRR030839, DRR030840,
DRR030841, DRR030842, DRR030843, DRR030844, DRR030845, DRR030846,
DRR030847, DRR030848, DRR030849, DRR030850, DRR030851, DRR030852,
DRR030853, DRR030854
BioSample:SAMD00026264, SAMD00026265, SAMD00026266, SAMD00026267,
SAMD00026268, SAMD00026269, SAMD00026270, SAMD00026271,
SAMD00026272, SAMD00026273, SAMD00026274, SAMD00026275,
SAMD00026276, SAMD00026277, SAMD00026278, SAMD00026279,
SAMD00026280, SAMD00026281, SAMD00026282, SAMD00026283,
SAMD00026284, SAMD00026285, SAMD00026286, SAMD00026287,
SAMD00026288, SAMD00026289, SAMD00026290, SAMD00026291,
SAMD00026292, SAMD00026293, SAMD00026294, SAMD00026295,
SAMD00026296, SAMD00026297, SAMD00026298, SAMD00026299,
SAMD00026300, SAMD00026301, SAMD00026302, SAMD00026303,
SAMD00026304, SAMD00026305, SAMD00026306, SAMD00026307,
SAMD00026308, SAMD00026309, SAMD00026310, SAMD00026311,
SAMD00026312, SAMD00026313, SAMD00026314, SAMD00026315,
SAMD00026316, SAMD00026317, SAMD00026318, SAMD00026319,
SAMD00026320, SAMD00026321, SAMD00026322, SAMD00026323
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Reticulitermes speratus
ORGANISM Reticulitermes speratus
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
Blattoidea; Termitoidae; Rhinotermitidae; Reticulitermes;
Frontotermes.
REFERENCE 1 (bases 1 to 2599)
AUTHORS Mitaka,Y., Kobayashi,K. and Matsuura,K.
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2016) to the DDBJ/EMBL/GenBank databases.
Contact:Kenji Matsuura
Kyoto University, Laboratory of Insect Ecology, Graduate School of
Agriculture; Kitashirakawa Oiwake-cho, Kyoto, Kyoto 606-8502, Japan
REFERENCE 2
AUTHORS Mitaka,Y., Kobayashi,K. and Matsuura,K.
TITLE Caste-, sex-, and age-dependent expression of immune-related genes
in a Japanese subterranean termite, Reticulitermes speratus
JOURNAL PLoS ONE 12, e0175417 (2017)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pone.0175417
COMMENT ##Assembly-Data-START##
Assembly Method :: Trinity v. trinityrnaseq_r2012-04-27
Sequencing Technology :: illumina Hiseq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2599
/db_xref="taxon:60591"
/mol_type="mRNA"
/note="contig: comp788807_c1_seq27"
/organism="Reticulitermes speratus"
/tissue_type="whole body"
CDS 100..2211
/codon_start=1
/gene="calpain2D"
/product="putative calpain 2 isoform D"
/protein_id="BAX07390.1"
/transl_table=1
/translation="MPYQHEKFVVYNLGEKGSGLRARGEVQDFLNIRNRCLEEGSLFE
DPEFPAEDTSIFFSKTPPRPFEWKRPIEIADNPEFFVGDATRFDVQQGELGDCWLLAA
VANLTLNRVLFSQVVPDDQSFGDKYAGLFHFRFWQYGRWVDVVIDDRLPTYSGKLVFL
HSSEHNEFWSALLEKAYAKLHGSYEALKGGTTCEAMEDFTGGVTEMYELNQAPANLYR
IMLKAYERSSLMGCSIEPDPNVLEAQTPEGLIKGHAYSITRVKYVDINTPRSSGKIPL
IRIRNPWGNEAEWNGPWSDKSPEWRFIPDEEKEEIGLTFDDDGEFWMSYQDFKTQFSR
LEICNLNPDSLSEEGILSSHKRKWEMSMFEGEWVRGVTAGGCRNYLETFWHNPQYCIT
LEDPDDEDEDDKCTVIVALMQKNHRSQRKMGMECLTIGFAMYHLQDPDNLPKPLDLNF
FKYNTSVARSPSFINLREVNCRFKLPPGVYCIVPSTFEPNEEGEFILRVFSEHRNHME
ENDEEVGLGAVDERVVNNPEPEEEKVQDKVKEFFLKIAGEDMEVDWMELKEILDYAMR
NETKNEGFSKDVCRSMVAMMDVDRSGKLGFEEFKALWIDIRHWKSVFSLYDKDGSGCL
SAFELRQALNSAGYRLNNHILNILAHRYSTKNGMITFDDYMMCAVRLKAMIDIFHEKD
PDNTNTAMFTLEEWVEKTLYS"
BASE COUNT 721 a 540 c 682 g 656 t
ORIGIN
1 cagttttatg ccgaaggaag cggatgaagc aagtgaagcg tgagatgcgt ctaaacgtgt
61 gcgggcgaac agagagacat catcaataaa gcctgcgcca tgccgtacca acacgagaag
121 tttgtggtct acaatcttgg agagaagggt tctggtctga gggcgcgagg agaagtgcag
181 gattttttaa atattcgcaa ccgatgtctg gaggaaggct cattgtttga agaccctgaa
241 tttcctgcgg aggacacgtc catattcttc agcaagactc cgcctcgacc atttgaatgg
301 aagaggccta tagaaattgc agataaccca gagttttttg tgggggatgc caccaggttt
361 gacgtgcagc aaggagagct gggtgactgt tggctactgg cagctgttgc caacctcaca
421 cttaacaggg ttttgttctc acaggtagtt cctgatgatc agagttttgg agacaaatat
481 gctggcctat ttcatttcag attttggcaa tatggacgct gggtagatgt cgtgatagat
541 gaccgactgc caacatactc tgggaagcta gtgtttctcc actcctcaga gcacaatgag
601 ttctggagtg ccctccttga gaaggcatat gcaaagttgc atggatcata cgaggcactg
661 aaagggggca cgacttgtga agcaatggag gacttcacag ggggagtgac agagatgtat
721 gaattaaacc aagcacccgc aaacctgtat aggatcatgc tgaaggcata tgagcgctca
781 tcactgatgg gctgctcaat tgagcctgac ccaaatgtcc tggaagcaca gacaccagag
841 ggcctcatca aggggcatgc ctacagcata acaagggtga agtatgttga catcaacaca
901 ccacgcagct cagggaaaat tccccttatc agaatacgta acccatgggg taatgaagcg
961 gaatggaatg gcccatggag tgacaaatcc cctgagtggc gattcattcc agacgaggag
1021 aaggaggaga ttggcctcac atttgatgat gatggtgagt tctggatgtc ataccaggat
1081 ttcaaaacac aattctcacg gctcgagatc tgcaacctga atccagactc cctgtctgag
1141 gagggaatcc tcagttcaca caagaggaag tgggagatga gcatgtttga gggtgagtgg
1201 gtgcgaggcg tcacagctgg aggctgcagg aactaccttg aaacattctg gcacaaccca
1261 cagtattgca tcacactgga ggacccagat gatgaggatg aggatgacaa atgcactgtc
1321 attgtggcac ttatgcagaa gaatcatagg tcacaacgca agatgggcat ggagtgcctg
1381 actataggat ttgccatgta ccacctacaa gacccagaca acctcccgaa gccactggac
1441 ctcaacttct tcaagtacaa tacatctgtt gcgcggtccc catcttttat caatctacgt
1501 gaggtgaact gtcgcttcaa gttgccacct ggtgtgtact gcattgttcc atccacattt
1561 gagcccaatg aagagggaga gttcattctg agggtcttct ccgaacacag gaatcacatg
1621 gaagagaatg atgaggaggt cggtctcgga gcagttgatg agagagtggt gaacaaccca
1681 gagccagagg aagagaaggt acaagacaaa gtgaaggagt ttttcctcaa gattgcagga
1741 gaagacatgg aagttgattg gatggagcta aaggagatct tggattatgc catgaggaat
1801 gaaacgaaga atgaaggctt ctcaaaggat gtatgtcgaa gcatggttgc catgatggat
1861 gtggatcggt ctggcaaact tggctttgag gagttcaaag ccctgtggat tgacattcga
1921 cactggaagt ctgtgttcag tttgtacgac aaagatggct ctggctgttt gagtgcattt
1981 gagcttcgtc aagctctcaa ttcagctggc tatcgcctta acaaccacat cctcaacatc
2041 cttgcacatc gctatagcac caagaatggg atgattacat ttgatgacta catgatgtgt
2101 gctgtcaggc tgaaggccat gattgatatc ttccatgaga aggaccctga caacaccaac
2161 acagcaatgt tcacactgga agagtgggtg gagaaaacac tttactcata aaacattgtg
2221 gatggatctt ccatctcttg gtaatcacta atgccacaca gaggaataat ggacttatcc
2281 tgtaagggtt tgtgtttgag acataaagtc catcctgtaa ggtgtatctc atgtaaagta
2341 gaactggggt gacttttcat tgttgagttg ctggctaacc atggaggtca aggaattctg
2401 cagtttaatg tgcagtatgt ttaaacattt tttctgatga tatattatca ttgctgccac
2461 atattctggg ttaacaaatc agcttactaa caaggggggt tccagttgat tgaaaccctc
2521 tgatttggct ccaattttgt agtatggcag tggaccctcc tctgacttct ttgtcgtctt
2581 cttcttcttc ttcttcttc
//