LOCUS FX553731 4168 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00006.
ACCESSION FX553731
VERSION FX553731.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 4168)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4168
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00006"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1505 a 683 c 1008 g 972 t
ORIGIN
1 aagcagtggt atcaacgcag agtggccatt acggccgggg aaatcgaaaa aaaattgaaa
61 cattttcatt ctgttcctta ctttctctct ctagggtttc ataattcgca aaaaaaattc
121 ataaatcttc ggtttcaaat ccctaattgc cttgccgttc atatgtttac tcctcaaaga
181 agcgcctggt ctctaaaatc taaggtttca agcgaaaaac ctagatccaa aggcaaagga
241 attagaaacg ttgattctgc cgctactcct ttgccgccgc tcgggttgtt gaatgggggc
301 gatttagacc gaggtggtga agatatggag gcgtggaagc ggttcaaaga tgaagggtta
361 ttagacgagt cgatttgcta caagaaagat cgtgagtctc ttgcttcgag aatcattgag
421 ctcgaaaagg atcttcacga gtaccagtat aacatggggc tcctcttgat cgagaaaaaa
481 gaatggtctt caacttttga agaaatgaag atgcgtcttg cagaagctga agagattttg
541 aaacgggagc aagctgccca tattattgca ttaactgaat ccgagaagcg agaagataat
601 ttacgcaagg ctctgggagt tgaaaagcaa tgtgtcactg atcttgaaaa agcattacgg
661 gagatgcggt ctgaaattgc cgaggttaag tataccgctg agaagaagat gacagaagct
721 tttgcattgg aagcaagtat tgaggagaaa aggctggata ctgaaagaaa attgcattcc
781 gcagatgcaa agctcgctga agctagtagg aagagttctg aaataaatag gaaattagaa
841 gacgtggaag atcgcgaacg caaagttcag agagaattaa actctatcaa ttctgagcga
901 aaagctctcg aaaaagatat ttctgaacaa aaagagcatt tgcgggagtg ggaaaaaaag
961 ttacaagatg gtcaaaacag actgcttgat gggcagaggc atattaatga gagggaggaa
1021 agaataaatg aggctgaagg aggtcttaag aagaaagaag aagagcttga agaagcaaaa
1081 agatcaattg agggtacaag aaatactctg aaacgcaagg aagaggatct tgatgtcagg
1141 ctaagatcat tggtttcaaa agagaaggag attgaactga aaatgaagaa cttacagaag
1201 aaggagaaag atttacatga aatagaggaa aaactcgatc accgtgaaag agaggagatt
1261 caaaagctac tcgatgaaca tagggctacc ctagatacca agaagagaga gtttgaatta
1321 gagttagaaa gtaagcgaaa gtccgttgat gaagaaatga aaagtaaatt tgctgcagtg
1381 aataaagcgg aaaaggaagt taaccgcaaa caagaactga ttagtaagag agaaaaggaa
1441 ctagagagta aaatggacaa aattaaaatt aaagagaagg atcttgagac taaatccaaa
1501 gctttgaaga agtgggagga atcattaaag tcggatgaaa agaagttggt agtagaaaag
1561 gatcagataa tgaaagatac acatgagctt aaggtatcaa taaatgaact tgaatcttta
1621 agagatgcgt taaatgctga acaacatcaa attgctgagg agagagaaaa gcttgaaata
1681 agcaaagaag agagagacca atatatccaa aagcaatccg agttgaagca agaaattgaa
1741 aagtatagga atatgcaaga ggaactttct aaaggaattg aatcgctaag agaggaaagg
1801 gagaagtttg agaaagaatg ggaatcactc gacgagaaaa aaataacgtt acagagagaa
1861 acaaaaaaaa tacatgagga gaaagagaag ctcgaaaagt ggcaccataa agagcaagaa
1921 aggttgagaa atgaagaggc taatgcaaaa gcagacattg aaaggcagct tgaagacatt
1981 aagctgcaga aagaagcatt tgagaatact atgaagcatg aaagattgat ggctcaagag
2041 gaagttgcta gacaattggc tgatgtcacg cgagagcttg aactccgaaa acatgatctc
2101 gagatgaaca tgcagaaaaa gcaagaagaa atggagagaa agctacagga gaaagagaga
2161 gaatttgaaa ctcgaaagga agccgaactt tgtcgcatca cctcactaat taatctaaat
2221 gattctaaac tccagaaact gagaattgaa caggaccgat tagatagaga gaaagaagaa
2281 gtcgaacttc agaaaaagaa actccagaat gaccaatctg agattcaaag agacattgac
2341 acactccgtc agcttagcaa aaacttaaaa aatcaacgtg cagaatttat caaggagaag
2401 gaacgctttc ttgcagcagc agagcgatgc aaaacttgtc aaaattgtgg ggtttcaatc
2461 agtgagctag aaatggtggg tatcattcag tcatcagcag aaattgagaa tgcagatatt
2521 gttttgccaa gccttcccga tgatcacatc gagcaacata tgaaaaacaa aggatcacat
2581 gttacatctc ctcaaactgg ttcccgggtt tttggttcag gatttcttca aaaatgcaca
2641 aaaatcttca agttttctcc tggaaaaaat gctgaaacta gcgctactac aacgcctttg
2701 gtgtttggcg agcaacttga tatcgttgca ccagaggatg cagcagctaa tgataacaat
2761 cctgctgccg atgttgagag tgttacagtg aatccgcctt tagtgtttgg cgagcaactt
2821 gatatcgctg catcggagga tgcagcagct aatgataaca atcctgctgc cgatgttgag
2881 agagttacag tgaatcctcc tacacttgca ccagtggcta ctgaacaaac tgaaaccgag
2941 gaatcttccc tacctaccga aaatgattcc ccaccaaagc agaggggagg aaggcagtct
3001 accagaagag ggagaggggc aaaaacagta agaagaacca gaaccatgga agctgttgtt
3061 gatgacgcta aagcaatact tggagacact ttgattgttg aagaggcgaa agaatcttct
3121 cagcagaacg atgaacagag tcaaggggct tctgtacaca cggttggcac cagtaatacg
3181 aggcagaaaa gacgtcgtgc gcctgcatct gaaatgacaa acagtgaact tgatgcagag
3241 gaaagcgaaa gtcagtctca gagcatatcc gttggaggag ggcgacgcaa gaagcgtcag
3301 acctcagcag cttcagaggt gcaagctcct gttgtggaga ggagatacaa cctcagacac
3361 tctacagttg cgaagaactc agcagcagca accccggcag gttcggatca ggcagaagtg
3421 caaactaagg caagtcatca agcttcacat gataataatc agatttcaat gggtgatgaa
3481 cctgctttag aaggtaacca caaagtgacc catacagtac agaaaactac taccacaagt
3541 gttatggaag tatcatcgaa gcatgtaatg gaagaaactc atgaagagaa caatgtggta
3601 caatctgtag aaatcagtga aatgtctgct agtgaagaag cagaaggtga agtacaaggt
3661 gttcctacca tagctgaaga accagcaacc ccttcaagtg gaagttcaac ttccggcgat
3721 attggaaatg atgatgacat ggatgatgat gaagaagaag aagagagaca caatgcttca
3781 atcggaaaaa agctgtggaa cttcttcacg acttgataaa atttgcgcat gcagtctagg
3841 ctctttattc tagctcttca gatttattat tcactttcaa ctcctttgag tttataattt
3901 caaggtggga tggagttagt tctttgtttg tattatttat tgcaaatact tgctacctgt
3961 gatttcttct tcttcttctt tcgatgatgg attgattaga tgatgactta tttgtattaa
4021 tactagttag accttgttag tctaggagat tggttgtgta atagtttcat ttgtggtttt
4081 cttcttatca aaattgtaag tttcgtgtct gcgcattttt atcataattg taatgtatca
4141 gaagatgatg atcaacggtt cttctatc
//