LOCUS CY076728 2320 bp cRNA linear VRL 29-MAR-2011
DEFINITION Influenza A virus (A/swine/Thailand/CU-SA412/2010(H1N1)) segment 1
sequence.
ACCESSION CY076728
VERSION CY076728.1
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/swine/Thailand/CU-SA412/2010(H1N1))
ORGANISM Influenza A virus (A/swine/Thailand/CU-SA412/2010(H1N1))
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 2320)
AUTHORS Kitikoon,P., Sreta,D., Nuntawan Na Ayudhya,S.,
Wongphatcharachai,M., Lapkuntod,J., Prakairungnamthip,D.,
Bunpapong,N., Suradhat,S., Thanawongnuwech,R. and Amonsin,A.
TITLE Brief report: molecular characterization of a novel reassorted
pandemic H1N1 2009 in Thai pigs
JOURNAL Virus Genes (2011) In press
PUBMED 21442301
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 2320)
AUTHORS Kitikoon,P., Sreta,D., Na Ayudhya,S.N., Chareonwisan,N.T.,
Jittimanee,S., Thontiravong,A., Wongphatcharachai,M., Lapkuntod,J.,
Tuanudom,R., Rungprasert,K., Ninvilai,P., Prakairungnamthip,D.,
Boonyapisitsopa,S., Bunpapong,N., Tantilertcharoen,R.,
Oraveerakul,K., Suradhat,S., Thanawongnuwech,R. and Amonsin,A.
CONSRTM Minnesota Center of Excellence for Influenza Research and
Surveillance
TITLE Direct Submission
JOURNAL Submitted (08-NOV-2010) Department of Veterinary Public Health,
Chulalongkorn University, Henri Dunant road, Patumwan, Bangkok
10330, Thailand
FEATURES Location/Qualifiers
source 1..2320
/organism="Influenza A virus
(A/swine/Thailand/CU-SA412/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/swine/Thailand/CU-SA412/2010"
/serotype="H1N1"
/isolation_source="nasal swab"
/host="swine; age 4 W"
/db_xref="taxon:915341"
/segment="1"
/country="Thailand: Saraburi"
/collection_date="Apr-2010"
misc_feature 1..2320
/db_xref="IRD:CEIRS-UMN028-CU-SA412.1"
gene 7..2286
/gene="PB2"
CDS 7..2286
/gene="PB2"
/codon_start=1
/product="polymerase PB2"
/protein_id="ADP94004.1"
/translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMRYPITADKRIMDMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRN
GPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQ
DVIMEVVFPNEVGARILTSESQLAITKEKKEELQDCKIAPLMVAYMLERELVRKTRFL
PVAGGTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADP
LASLLEMCHSTQIGGVRMVDILRQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTS
GSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQ
SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG
IESIDNVMGMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQ
DPTMLYNKMEFEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAA
PPEQSRMQFSSLTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEG
TSGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRD
SSILTDSQTATKRIRMAIN"
BASE COUNT 780 a 439 c 593 g 508 t
ORIGIN
1 ttcaatatgg agagaataaa agaactgaga gatctaatgt cgcagtcccg cactcgcgag
61 atactcacta agaccactgt ggaccatatg gccataatca aaaagtacac atcaggaagg
121 caagagaaga accccgcact caggatgaag tggatgatgg caatgagata cccaattaca
181 gcagacaaga gaataatgga catgattcca gagaggaatg aacaaggaca aaccctctgg
241 agcaaaacaa acgatgctgg atcagaccga gtgatggtat cacctctggc cgtaacatgg
301 tggaatagga acggcccaac aacaagtaca gttcattacc ctaaggtata taaaacttat
361 ttcgaaaagg tcgaaaggtt gaaacatggt accttcggcc ctgtccactt cagaaatcaa
421 gttaaaataa ggaggagagt tgatacaaac cctggccatg cagatctcag tgccaaggag
481 gcacaggatg tgattatgga agttgttttc ccaaatgaag tgggggcaag aatactgaca
541 tcagagtcac agctggcaat aacaaaagag aagaaagaag agctccagga ttgtaaaatt
601 gctcccttga tggtggcgta catgctagaa agagaattgg tccgtaaaac aaggtttctc
661 ccagtagccg gcggaacagg cagtgtttat attgaagtgt tgcacttaac ccaagggacg
721 tgctgggagc agatgtacac tccaggagga gaagtgagaa atgatgatgt tgaccaaagt
781 ttgattatcg ctgctagaaa catagtaaga agagcagcag tgtcagcaga cccattagca
841 tctctcttgg aaatgtgcca cagcacacag attggaggag taaggatggt ggatatcctt
901 agacagaatc caactgagga acaagccgta gacatatgca aggcagcaat agggttgagg
961 attagctcat ctttcagttt tggtgggttc actttcaaaa ggacaagcgg atcatcagtc
1021 aagaaagaag aagaagtgct aacgggcaac ctccaaacac tgaaaataag agtacatgaa
1081 gggtatgaag aattcacaat ggttgggaga agagcaacag ctattctcag aaaggcaacc
1141 aggagattga tccagttgat agtaagcggg agagacgagc agtcaattgc tgaggcaata
1201 attgtggcca tggtattctc acaagaggat tgcatgatca aggcagttag gggcgatctg
1261 aactttgtca atagggcaaa ccagcgactg aaccccatgc accaactctt gaggcatttc
1321 caaaaagatg caaaagtgct tttccagaac tggggaattg aatccatcga caatgtaatg
1381 ggaatgatcg gaatactgcc cgacatgacc ccaagcacgg agatgtcgct gagagggata
1441 agagtcagta aaatgggagt agatgaatac tccagcacgg agagagtggt agtgagtatt
1501 gaccgatttt taagggttag agatcaaaga gggaacgtac tattgtctcc cgaagaagtc
1561 agtgaaacgc aaggaactga gaagttgaca ataacttatt cgtcatcaat gatgtgggag
1621 atcaatggcc ctgagtcagt gctagtcaac acttatcaat ggataatcag gaactgggaa
1681 attgtgaaaa ttcaatggtc acaagatccc acaatgttat acaacaaaat ggaatttgaa
1741 ccatttcagt ctcttgtccc taaggcaacc agaagccggt acagtggatt cgtaaggaca
1801 ctgttccagc aaatgcggga tgtgcttggg acatttgaca ctgtccaaat aataaaactt
1861 ctcccctttg ctgctgctcc accagaacag agcaggatgc aattttcctc attgactgtg
1921 aatgtgagag gatcagggtt gaggatactg gtaagaggca attctccagt attcaattac
1981 aacaaggcaa ccaaacgact tacagttctt ggaaaggatg caggtgcatt gactgaagat
2041 ccagatgaag gcacatctgg ggtggagtct gctgtcctga gaggatttct cattttgggc
2101 aaagaagaca agagatatgg cccagcatta agcatcaatg aactgagcaa tcttgcaaaa
2161 ggagagaagg ctaatgtgct aattgggcaa ggggacgtag tgttggtaat gaaacgaaaa
2221 cgggactcta gcatacttac tgacagccag acagcgacca aaagaattcg gatggccatc
2281 aattagtgtc gaattgttta aaaacgacct tgtttctact
//