LOCUS CR859567 4048 bp mRNA linear HTC 01-MAY-2008
DEFINITION Pongo abelii mRNA; cDNA DKFZp459E174 (from clone DKFZp459E174).
ACCESSION CR859567
VERSION CR859567.1
KEYWORDS HTC.
SOURCE Pongo abelii (Sumatran orangutan)
ORGANISM Pongo abelii
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Pongo.
REFERENCE 1 (bases 1 to 4048)
AUTHORS Ansorge W., Krieger S., Regiert T., Rittmueller C., Schwager B.,
Mewes H.W., Weil B., Amid C., Osanger A., Fobo G., Han M.,
Wiemann S.
CONSRTM The German cDNA Consortium
JOURNAL Submitted (12-NOV-2004) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research
Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by EMBL (European Molecular Biology Laboratories,
Heidelberg/Germany) within the cDNA sequencing consortium of the
German
Genome Project.
This clone (DKFZp459E174) is available at the RZPD Deutsches
Ressourcenzentrum fuer Genomforschung GmbH in Berlin, Germany.
Please contact RZPD for ordering:
http://www.rzpd.de/cgi-bin/products/cl.cgi?CloneID=DKFZp459E174
Further information about the clone and the sequencing project is
available at http://mips.gsf.de/projects/cdna/
FEATURES Location/Qualifiers
source 1..4048
/organism="Pongo abelii"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="459 (synonym: pcor1). Vector pSport1_Sfi; host
DH10B; sites SfilA + SfilB"
/clone="DKFZp459E174"
/tissue_type="cortex"
/note="karyopherin beta 3 (Homo sapiens), alternative
start, C-terminus truncated, differentially spliced"
/db_xref="taxon:9601"
CDS join(98..2584,2584..2619,2619..>2663)
/codon_start=1
/gene="DKFZp459E174"
/product="hypothetical protein"
/db_xref="GOA:Q5R929"
/db_xref="InterPro:IPR001494"
/db_xref="InterPro:IPR016024"
/db_xref="InterPro:IPR034085"
/db_xref="InterPro:IPR040122"
/db_xref="InterPro:IPR041389"
/db_xref="InterPro:IPR041653"
/db_xref="UniProtKB/TrEMBL:Q5R929"
/protein_id="CAH91731.1"
/translation="MAAAAAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITF
LLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQ
SSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLQEAALHIFWNFPG
IFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSARATAAFILANEHNVALFKHFADLL
PGFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLEATLQLSLKLCGDTSLINMQR
QLALEVIVTLSETAAAMLRKHTNIVAQTIPQMLAMMVDLEEDEDWANADELEDDDFDS
NAVAGESTLDRMACGLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQ
MEGILNEIVNFVLLFLQDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTM
EDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLV
LEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGL
AVGKEKFMQDASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLP
VVMGPLMKTASIKPEVALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTAC
QMLVCYAKELKEGFVEYTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLLECARVRGPE
YLTQMWHFMCDALIKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNEHFEELGGILK
AKLEEHFKNPESRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSYKEK
"
BASE COUNT 1205 a 821 c 950 g 1072 t
ORIGIN
1 ggggcgagcg cggcgggagg aaggggcgcc ctgagtccac agccctgggg gaggtcggag
61 ggtctgaaag cgagaggtgc ccgtgagtgg aagcgcaatg gcggcggccg cggcggagca
121 gcaacagttc tacctgctcc tgggaaacct gctcagcccc gacaatgtgg tccggaaaca
181 ggcagaggaa acctatgaga atatcccagg ccaatcaaag atcacattcc tcttacaagc
241 tatcagaaat acgacagctg ctgaagaggc tagacaaatg gccgccgttc tcctaagacg
301 tctcttgtcc tctgcatttg atgaagtcta tccagcactt ccctctgatg ttcagactgc
361 catcaagagt gagctactca tgattattca gatggaaaca caatctagca tgaggaaaaa
421 agtttgtgat attgccgcag aactggccag gaatttaata gatgaggatg gcaataacca
481 gtggcccgaa ggtttgaagt tcctttttga ttcagtcagc tctcaaaatg tgggactgca
541 ggaagctgcc cttcacattt tctggaactt tcctggaatt tttgggaacc agcaacagca
601 ctatttagac gtcatcaaac gaatgttagt tcagtgtatg caagatcagg aacacccgtc
661 gatcaggaca ttatctgcta gagctacagc tgcatttata cttgcaaatg agcataatgt
721 tgctctgttc aaacattttg cagacttgct accgggattc ctacaggctg taaatgactc
781 gtgctaccag aatgatgatt ctgtcctaaa atccctcgtt gagattgcag atactgttcc
841 aaagtatttg cgtcctcact tggaagcaac tctacagcta agtctaaagt tgtgtggaga
901 cactagcctc atcaatatgc agcgccagct tgcccttgaa gtgatcgtca ccctctctga
961 gactgcagct gccatgttaa gaaaacatac caatattgtt gcacagacta ttcctcagat
1021 gttagcaatg atggttgatt tggaagaaga tgaggactgg gcgaatgcag atgaactaga
1081 agatgatgat tttgacagca atgcagttgc aggcgagagt actctagacc gaatggcttg
1141 tggacttggt ggaaagctcg ttctgccgat gatcaaggaa cacattatgc aaatgcttca
1201 aaatcctgac tggaaatacc ggcatgcggg attgatggcc ttatctgcca ttggtgaagg
1261 gtgccaccag caaatggaag gaattctaaa tgagatcgta aattttgttt tactttttct
1321 ccaggatcct catccaagag taaggtatgc agcctgtaat gctgtgggac agatggctac
1381 agattttgca cctggtttcc aaaagaaatt tcatgaaaag gtgattgcag ctctgctgca
1441 gaccatggaa gaccaaggca atcaacgtgt gcaggcccat gcagctgctg ccctcattaa
1501 ctttactgaa gactgtccca agtcactact tattccatac ttggataatt tggtgaaaca
1561 tctgcattcc attatggtac tgaagcttca agagctgatt cagaaaggca ccaagttagt
1621 tttggaacaa gttgtgacat ccattgcatc agttgctgat actgcagaag aaaaatttgt
1681 cccctactat gatttattta tgccatcact gaagcacatc gttgagaatg cggttcaaaa
1741 agaactgaga cttctgagag gaaaaactat tgaatgcatt agcctcattg gtctggctgt
1801 tgggaaggaa aaattcatgc aggatgcatc agatgtgatg cagcttttgt taaagaccca
1861 gacagacttc aatgatatgg aagatgatga tcctcagatc tcctacatga tctcagcatg
1921 ggccagaatg tgcaaaatcc ttggaaaaga atttcagcag taccttccag tggttatggg
1981 gcctttaatg aagacggctt caattaagcc cgaagtagcc cttttggata cccaagatat
2041 ggagaatatg agtgatgatg atggttggga atttgtgaac cttggagatc agcaaagctt
2101 tggtattaaa actgcaggac tagaagaaaa atcaactgct tgccagatgt tggtttgcta
2161 tgctaaggag ttaaaggaag gctttgtgga gtacactgaa caggttgtca aactgatggt
2221 ccctttactg aaattttatt tccacgatgg tgttcgagtg gcagcagcag aatccatgcc
2281 ccttctcctg gagtgtgcaa gagtccgtgg tcctgagtat ctcacacaga tgtggcattt
2341 tatgtgtgat gctctaatta aggccattgg tacagaacca gattcagatg tcctctcaga
2401 aataatgcat tcttttgcaa agtgcattga agtaatggga gatggatgcc ttaataatga
2461 acactttgaa gaactgggag gtatattgaa agcaaagctt gaagaacatt ttaaaaatcc
2521 agaatcacga caagttaaaa gacaagatga agactatgat gaacaggtcg aagagtcact
2581 acagatgagg atgataatga tgtttatatt ctgaccaagt gtcagatatt ttacactcaa
2641 tattcagtag ctacaaagaa aaggtgttac catagtttga acagctgctt ccattaattg
2701 tcaacctcat ttgtccacat agaccatggc cagacagaca atggggatta tgcatctttg
2761 atgatgtcat agaacactgt agtccagcct catttaaata tgcagaatat ttcttaagac
2821 caatgctcca atatgtatgt gacacagccc agaagtcagg caagcagctg catatggcct
2881 gggagtcatg gcacagtatg gtggagataa ttatcgcctt ttgtacagaa gcacttccct
2941 gctggtaaga gttattcagt ctgcggattt taagaccaaa gaaaatgtca atgctacaga
3001 gaactgcatc tcagcagtag ggaaaatgat gaagttcaag cctgactgtg taaatgttga
3061 agaggtcctt ccacactggt tgtcttggct tccactacat gaagataaag aagaagctgt
3121 tcagactttc aattatctgt gtgacctgat tgaaagtaat catccaattg ttcttggccc
3181 aaacaatacc aatctgccca aaatattcag tataattgcg gaaggagaaa tgcatgaggc
3241 aattaaacat gaagatcctt gtgccaaacg tctggccaat gtcgttcgcc aagtacagac
3301 ttctggagga ctgtggactg agtgcatagc acagctcagt cctgagcagc aggccgccat
3361 tcaggagctc ctgaactctg cgtgaagggc cttaatgtca cccaccagaa aactaactcc
3421 aaataaacgc ttaccctttc gtttaggttt ctttgttttg tttttgagca aaagagatcg
3481 gtagtgttgt gtgtaggcca ttcttctgga gagccacgag caggaagagc agcgctgtgt
3541 tgcagaatgg agtttccatg gatttctacc agaccactga aggagttcct gaaagtcctg
3601 cggtagcact gaagagtatt tttctattgg tataacccac ccacctgaag gggaaaggga
3661 aatcaaatta atttttctca ttagacataa ggaaatttaa ggaaaaacag ctttaagaac
3721 agttactcag cgtagatgtg tgttcacaca aattgctctg cactcagtgt tcattgtgaa
3781 ttagagtgtg agtctttctg tagggtagaa agaagcctac tacccaggaa accagtagac
3841 ccaaaagttg aaaaaaaact gatgacagac aacaagcatg aagatggcac atttgatgtc
3901 actttggttc tttttcccag aaggcttata cagtgactca gtcgggaagc tttccagctt
3961 ccagcccttg aatgtgaagt gtcattggca tgtctggcag tagtctctca ttcactcctc
4021 aataaacaac attgaataca aaaaaaaa
//