LOCUS CK334853 575 bp mRNA linear EST 12-MAY-2010 DEFINITION H3117D03-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3117D03 5', mRNA sequence. ACCESSION CK334853 VERSION CK334853.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 575) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3117 row: D column: 03 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..575 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3117D03-5" /db_xref="taxon:10090" /clone="H3117D03" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 158 a 113 c 119 g 185 t ORIGIN 1 cctattcatg gggctgattt ctctccttcc acttagccta gggcatcagg acacagctac 61 tagtaagatg accaccttcc agataatggt agacatttgt aaattcttcc agagagacag 121 gtccaccgct gttgctagct aagatggtca ttaaacctcc tggtttaggg catcccaagg 181 tgacatcctt gccgcaagtg ttcctactca atgcaaagat ttaatttgag gacataagtc 241 tacaagtgat ttatgcttga atttgggtgg acctgtttgt ttgtttgttt tttcctgtag 301 ctgattggtt cccaagctac tcaggctctg ggaaagaaag tgctcacaac ccatgaagct 361 ggtttccatg gcatcacctc gaccattcag tggccaggag ataaactagg ctttatactt 421 gaggttatct aattcagcat cactttggga ttcaactgat gagaactttt aatctgcttt 481 tgaaaaaact gtactcatta aaatgaaggg aattttaatt atttaaaacc tagagttttt 541 ttttagaagt aagcaaggtg tgattgtata atatc //