LOCUS BG088853 593 bp mRNA linear EST 12-MAY-2010 DEFINITION H3158D09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3158D09 5', mRNA sequence. ACCESSION BG088853 VERSION BG088853.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 593) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088853.1. Other_ESTs: H3158D09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3158 row: D column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..593 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3158D09-5" /db_xref="taxon:10090" /clone="H3158D09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 141 a 168 c 166 g 118 t ORIGIN 1 cagagaccaa gcatcgcatc agcatggagg tggctgcctc caaggggctg cccccactca 61 agtaccacct gctgccccgg accaagggct ttaccacggc agtccagtgc ctccggggga 121 cagttgcagc tatctatgac gtgaccctga acttcagagg gaacaagaac ccatctctac 181 tggggatcct gtatgggaag aaatatgagg cagacatgtg tgtgaggagg ttccccctgg 241 aagacatccc agcagatgag accagcgccg cccagtggct tcacaagctg taccaggaga 301 aggatgccct gcaagagatg tacaagcaga agggtgtatt cccaggggag cagttcaagc 361 ctgcccgaag gccgtggacc ctcctgaact tcctgtgctg ggccaccatc ctcctctcac 421 ccctcttcag cttcgtcctg ggtgtctttg ccagtggatc cccgctcctc atcctgacgt 481 tcttggggtt cgtgggagca gcttccttcg gagtccggag actgatagga ttgactgaga 541 tagagaaagg ctccagctat ggcaaccaag agcttaagaa aaggaataat taa //