LOCUS BG086091 729 bp mRNA linear EST 12-MAY-2010 DEFINITION H3121F09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3121F09 5', mRNA sequence. ACCESSION BG086091 VERSION BG086091.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 729) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG086091.1. Other_ESTs: H3121F09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3121 row: F column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..729 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3121F09-5" /db_xref="taxon:10090" /clone="H3121F09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 229 a 100 c 148 g 252 t ORIGIN 1 ggcagaattt tgaagtgtgg tgtaaagaaa tatggagagg gaaattgggc taaaatacta 61 tcccattata agttcaacaa ccgaacaagt gtcatgttaa aagatagatg gagaacaatg 121 aagagactga aactgattag ctgagacact ggaggctgga tgggtttgat tcagcttaat 181 acaaggataa atacttggat cactacactt tgtttacaat ttcctggtca gtaatgataa 241 agcattatgg tggtggtggg gcagtgagga gggggaagag aaagagagtt tttgtttttt 301 tggtttttgt ttgtttgttt gtttgtttgt tttttagagg agatttgtgc tttaaatcta 361 tgtcatcatt attttctgaa tctttatttt tgtaaaatat agatatgttg aaccctacca 421 aattcagtac cccatcccat attctgtttt aatacaaaag agtctaataa gattaaatga 481 atatatgact atttacggtt tgttctattc catgtctata aactaacctc acaaaatgcc 541 acctagcatt gagttttctg aagaacttaa ttggaataat ccttgatgtg actttactgc 601 tggatctatg gctaatgtac tacttactaa agatctatta ctagagaggt attcaaaaca 661 actcatgagt tctaacaagc ctagcttggc ttctctcaaa agtttcattt aaaggaagtt 721 gagttttca //