LOCUS BG083473 657 bp mRNA linear EST 12-MAY-2010 DEFINITION H3089E12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3089E12 5', mRNA sequence. ACCESSION BG083473 VERSION BG083473.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 657) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083473.1. Other_ESTs: H3089E12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3089 row: E column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..657 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3089E12-5" /db_xref="taxon:10090" /clone="H3089E12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 214 a 102 c 110 g 231 t ORIGIN 1 gatgagttca tatgcttcca gtgatttatc ttcttgcttg ttcctttgtt taagattgta 61 agatgtgtcg gctgctgata gctgccatca atgtttgttc tcttgtttta gaaaaacaaa 121 agaaatggcc tgtaccatcc aaggcctttg atgggagatc tatcagtgag ccattgacgt 181 ttctactgtt atgttatcat cttccaaaca aaagtgcttt gtttttttgg aagttattta 241 agttattata gacttacata aactattgca ttatttaatt gatttactgt tttggtttta 301 atcccctagt ctacctggaa aattaaagac aacaaggatg cagtattatt aaagcattca 361 acttttccat gcagagtgaa gctatccaaa gggaaaagga agattaaaaa aaaagcatac 421 aatttgtcat gtaaaggaat tagtaacatg tagtttgttt tctaccttag taatcaaatt 481 ctaggagtaa tttgtacatc caaggaacca gtttcacaaa gcataatgat ttttcaggca 541 aggtttcatg atttgtaaac atatctgtga tgggaaagtt attattacat caagaaagaa 601 aatctcaaca cattttaaac aaaacagact tcttttaaag actatctatt ttcaccc //