LOCUS BG082606 683 bp mRNA linear EST 12-MAY-2010 DEFINITION H3078A06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3078A06 5', mRNA sequence. ACCESSION BG082606 VERSION BG082606.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 683) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG082606.1. Other_ESTs: H3078A06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3078 row: A column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..683 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3078A06-5" /db_xref="taxon:10090" /clone="H3078A06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 136 a 199 c 180 g 168 t ORIGIN 1 cacaggtttc aggcataagg ctctgctcca ggattcctta cttttcccat gggaggttgg 61 cgttgggaac cagaattgga attttcacca tactgtgtcc tttagtccac ctcatctcac 121 cccacggctc cctgggaggc ccacaagccc agcttcccta cttaggtgcc ttttctccag 181 caaggagtca gcatgccctc ctcagggtcc caagctccct cactgccacc tgggccttgt 241 gtaccccctt gtctccccat ctacctctgc cccttagcct ggtaatgagc cacagagact 301 ggaagaggga gagtgccatc tactgggcct catagatgcc acctcgctga ggggggaggg 361 ctggggaaga ggcaagacag cctgcagcct tcagggtctg ggggtccctt gcaccacaaa 421 gctaaagctc ttgctagagc ctcagctgac agggtcggca gtagctatgc tcctccatct 481 gttgtgctgt tctgttgtga tcaaccctct tttaaaaaca tttaaacagc tcttgactct 541 cttgtgtggc ctgatgggga tgctttgtgg caggcatgca gcagactcct catagcgagg 601 ggaatggagg acagcccaca atactcctgg ccttaaaggg gctggtggtc tgtgccacct 661 tggggtgtta agctgtcaaa cct //