LOCUS BG072595 640 bp mRNA linear EST 12-MAY-2010 DEFINITION H3112F11-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3112F11 3', mRNA sequence. ACCESSION BG072595 VERSION BG072595.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 640) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072595.1. Other_ESTs: H3112F11-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3112 row: F column: 11 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..640 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3112F11-3" /db_xref="taxon:10090" /clone="H3112F11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 148 a 170 c 142 g 180 t ORIGIN 1 gagtagaaat attttattgg tgagacccca ccatctgcac aaagtggtcc tggaatcaag 61 ctccttcctc cttggcaatg cgatctttct tgagtggtcc cataaatgct ttcttctcct 121 ccatggtctg gaagcgacca tggccaaatt tggaggtggt gtcaatgaac ttcaggtcaa 181 tcttctccag ggcccgacgt ttggtctgaa ccagcaagga cttacgaaga gtaagtactc 241 gcttcttggt ccccaccaca cagcctttga gcatgatgaa gtcattggtc acctcaccat 301 aatgcacaaa gccacccagt gggttgatgc tcttgtcaga caagtcatag tcagtagatg 361 cattgttctt gatcagtttg ccatccttga tgaggtagcc ttgaccaatc ttgtaaatct 421 tcttgttaat ctctgttcgg tgatggtagc ctttctgccc agctcgagcc acagagaagg 481 caacacgggc agggtgccag gctccaatac aggcaacttt gcgcaaacct cgatgggtct 541 ttcggggcag tttctttgta tgccaacgac tggttacccc tttgtaccct ttgccttttg 601 tcacgccaat gacatcaatc atctcatcct gcccaaacac //