LOCUS BC137539 1506 bp mRNA linear HUM 12-MAY-2008 DEFINITION Homo sapiens hepatocyte nuclear factor 4, alpha, mRNA (cDNA clone MGC:169162 IMAGE:9021539), complete cds. ACCESSION BC137539 VERSION BC137539.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1506) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1506) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: LLDM Plate: 673 Row: g Column: 9. FEATURES Location/Qualifiers source 1..1506 /db_xref="H-InvDB:HIT000501429" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:169162 IMAGE:9021539" /tissue_type="Pooled, cerebellum, kidney, placenta, testis, lung, colon, liver, heart, thyroid, bladder, uterus, PCR rescued clones" /clone_lib="NIH_MGC_362" /lab_host="DH10B" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: TACTGGCA" gene 1..1506 /gene="HNF4A" /gene_synonym="HNF4" /gene_synonym="HNF4a7" /gene_synonym="HNF4a8" /gene_synonym="HNF4a9" /gene_synonym="NR2A1" /gene_synonym="NR2A21" /gene_synonym="TCF" /db_xref="GeneID:3172" /db_xref="HGNC:HGNC:5024" /db_xref="MIM:600281" CDS 40..1293 /gene="HNF4A" /gene_synonym="HNF4" /gene_synonym="HNF4a7" /gene_synonym="HNF4a8" /gene_synonym="HNF4a9" /gene_synonym="NR2A1" /gene_synonym="NR2A21" /gene_synonym="TCF" /codon_start=1 /product="hepatocyte nuclear factor 4, alpha" /protein_id="AAI37540.1" /db_xref="GeneID:3172" /db_xref="HGNC:HGNC:5024" /db_xref="MIM:600281" /translation="MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSE GTNLNAPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQC VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEV LSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVA LLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPF QELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRF GELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGPCQAQEGRGWSGDSP GDRPHTVSSPLSSLASPLCRFGQVA" BASE COUNT 327 a 424 c 457 g 298 t ORIGIN 1 cagggtaggg caggtggccg cggcgtggag gcagggagaa tgcgactctc caaaaccctc 61 gtcgacatgg acatggccga ctacagtgct gcactggacc cagcctacac caccctggaa 121 tttgagaatg tgcaggtgtt gacgatgggc aatgacacgt ccccatcaga aggcaccaac 181 ctcaacgcgc ccaacagcct gggtgtcagc gccctgtgtg ccatctgcgg ggaccgggcc 241 acgggcaaac actacggtgc ctcgagctgt gacggctgca agggcttctt ccggaggagc 301 gtgcggaaga accacatgta ctcctgcaga tttagccggc agtgcgtggt ggacaaagac 361 aagaggaacc agtgccgcta ctgcaggctc aagaaatgct tccgggctgg catgaagaag 421 gaagccgtcc agaatgagcg ggaccggatc agcactcgaa ggtcaagcta tgaggacagc 481 agcctgccct ccatcaatgc gctcctgcag gcggaggtcc tgtcccgaca gatcacctcc 541 cccgtctccg ggatcaacgg cgacattcgg gcgaagaaga ttgccagcat cgcagatgtg 601 tgtgagtcca tgaaggagca gctgctggtt ctcgttgagt gggccaagta catcccagct 661 ttctgcgagc tccccctgga cgaccaggtg gccctgctca gagcccatgc tggcgagcac 721 ctgctgctcg gagccaccaa gagatccatg gtgttcaagg acgtgctgct cctaggcaat 781 gactacattg tccctcggca ctgcccggag ctggcggaga tgagccgggt gtccatacgc 841 atccttgacg agctggtgct gcccttccag gagctgcaga tcgatgacaa tgagtatgcc 901 tacctcaaag ccatcatctt ctttgaccca gatgccaagg ggctgagcga tccagggaag 961 atcaagcggc tgcgttccca ggtgcaggtg agcttggagg actacatcaa cgaccgccag 1021 tatgactcgc gtggccgctt tggagagctg ctgctgctgc tgcccacctt gcagagcatc 1081 acctggcaga tgatcgagca gatccagttc atcaagctct tcggcatggc caagattgac 1141 aacctgttgc aggagatgct gctgggaggt ccgtgccaag cccaggaggg gcggggttgg 1201 agtggggact ccccaggaga caggcctcac acagtgagct cacccctcag ctccttggct 1261 tccccactgt gccgctttgg gcaagttgct taacctgtct gtgcctcagt ttcctcacca 1321 gaaaaatggg aacaaggcaa tggtctattt gttcaggcac cgagaaccta gcacgtgcca 1381 gtcactgttc taagtgctgg caattcagca aagaacaaga tctttgccct cggggaggct 1441 gtgtgtgtgt gagtatgtat ggatgcgtgg atatctgtgt atatgcccgt atgtgcgtgc 1501 atgtgt //