LOCUS BC136781 3936 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens protocadherin gamma subfamily A, 11, mRNA (cDNA clone
MGC:168394 IMAGE:9020771), complete cds.
ACCESSION BC136781
VERSION BC136781.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3936)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3936)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 671 Row: g Column: 9
single stranded.
FEATURES Location/Qualifiers
source 1..3936
/db_xref="H-InvDB:HIT000500770"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168394 IMAGE:9020771"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CGTGCCCC"
gene 1..3936
/gene="PCDHGA11"
/gene_synonym="PCDH-GAMMA-A11"
/db_xref="GeneID:56105"
/db_xref="HGNC:HGNC:8698"
/db_xref="MIM:606298"
CDS 34..2841
/gene="PCDHGA11"
/gene_synonym="PCDH-GAMMA-A11"
/codon_start=1
/product="protocadherin gamma subfamily A, 11"
/protein_id="AAI36782.1"
/db_xref="GeneID:56105"
/db_xref="HGNC:HGNC:8698"
/db_xref="MIM:606298"
/translation="MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGS
FVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSS
CFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARD
PDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDG
GDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGING
EVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTM
LITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLP
FKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNP
PVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSI
NSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYP
ALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGEHT
GEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLESL
ANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGLAGMPTSH
FVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLLIAEDS
AIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL
ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR
DGKAPAGGNGNKKKSGKKEKK"
BASE COUNT 934 a 1108 c 1042 g 852 t
ORIGIN
1 gagaaaccgc ggaatatcgg cttagagcct gccatggcga atcggctaca gcgcggggac
61 cgcagtcggc tgctgctgct gctgtgcatt ttcctgggga cgctgcgggg gttccgggcc
121 aggcagatcc gatattcggt gccagaagag accgaaaagg gctccttcgt gggcaatatc
181 tccaaggacc tggggctgga gccccgggag ctggcgaagc gcggagtccg catcgtctcc
241 agagggaaga cacagctttt cgctgtgaat ccgcgaagcg gcagcttgat cacggcaggc
301 aggatagacc gggaggagct ctgtgagacg gtgtcctcct gttttttaaa tatggaactt
361 ctcgtggagg acaccttgaa gatttacgga gtggaggtgg aaataataga tattaatgat
421 aacgccccca gcttccagga ggacgaagtg gagataaaag tcagtgagca cgcaattcct
481 ggggcgcgat ttgctcttcc taatgctagg gatccagatg tgggcgtgaa ctccctccag
541 agctaccagc tcagccctaa taattacttt tccttgcaac tgcggggcag aacggatggg
601 gccaagaatc cagagctagt actggaggga agcctggacc gagagaaaga ggctgctcac
661 ctgctcctcc tcacagcttt agatggaggc gatcccatcc gaaagggcgc agttcccatt
721 cgtgtggtgg tcctcgatgt aaatgatcac atcccaatgt ttacacagtc cgtatatcgc
781 gtgagtgttc cagaaaacat cagctccgga actcgggtgc tgatggttaa tgcaacggat
841 ccagacgagg gaatcaacgg ggaagtaatg tattcatttc ggaacatgga aagcaaggct
901 tctgaaatat tccaattgga ttcacaaact ggagaagttc aagtacgggg gtctctggat
961 tttgaaaaat atagattcta tgagatggaa attcaaggcc aagatggtgg aggtctcttt
1021 accaccacga cgatgttgat cactgttgtg gatgtgaatg ataacgctcc agaaataact
1081 atcacctctt ctattaattc aattctggaa aactctcctc caggtacagt gattgctctt
1141 ctaaatgtgc aagatcaaga ttctggagaa aatggtcaag tctcctgttt tattcctaac
1201 cacctgcctt ttaaattaga aaagacttat ggaaattatt acaaattgat aacaagcaga
1261 gtgctggaca gggagttggt ccagagctac aatataacgt tgacagccac agaccaggga
1321 agcccgcctt tgtctgcaga aactcatgtc tggctgaatg tggcagatga caacgataac
1381 cctcccgttt ttcctcactc ctcttactct gcctacattc ccgaaaacaa ccccaggggt
1441 gcctccatct tctcagtgac cgccctcgac ccggacagca aacagaatgc cctggtcact
1501 tactctctga cggatgacac tgtccagggg gtgcctctgt cctcctatgt ctctattaac
1561 tccaacactg gtgttctcta tgccctacaa tccttcgact atgagcagtt tcgagactta
1621 gaactgagag tgatagcacg tgacagcggg gacccgcccc tcagcagcaa cgtgtcgctg
1681 agcctgttcg tgctggacca gaacgacaat gcgcccgaga tcctgtaccc tgccctcccc
1741 acagacggct ccactggcgt ggagctggcg ccccgctctg cggaacctgg ctacctggtg
1801 accaaggtgg ttgcggtgga caaagattca ggccagaacg cctggctgtc ctatcgcctg
1861 cttaaggcca gcgagccggg actcttcgcg gtgggggagc acacgggcga ggtgcgtaca
1921 gcgcgggcac tgctggacag agacgcgctc aagcagagcc tcgtggtggc cgtccaggac
1981 cacggccagc cccctctctc ggccaccgtc acgctcaccg tggctgtggc cgacagcatc
2041 cccgaagtcc tggcggacct cggcagcctc gagtctctgg ctaactctga aacctcagac
2101 ctctcgctgt acttggtggt ggcggtggcc gcagtctcct gcatcttcct ggtctttgtc
2161 atcgtgctgc tggcactcag gctgtggcgc tggcataagt cacgcctgct gcaggcttct
2221 gaaggcgggt tggcaggtat gcccacgtca cattttgtag gcgtggacgg ggtacaggct
2281 ttcctgcaaa cctattccca cgaggtctct ctcattgcgg actcgcagaa gagtcacctg
2341 attttccccc agcccaacta tggggacacg ctcatcagcc aggagagctg tgagaaaagc
2401 gagccactct tgatagctga agactcagct atcattttag gcaaatgtga cccgacaagt
2461 aatcagcaag ccccgcccaa cacggactgg cgtttctctc aggcccagag acccggcacc
2521 agcggctccc aaaatggcga tgacaccggc acctggccca acaaccagtt tgacacagag
2581 atgctgcaag ccatgatctt ggcgtccgcc agtgaagctg ctgatgggag ctccaccctg
2641 ggagggggtg ccggcaccat gggattgagc gcccgctacg gaccccagtt caccctgcag
2701 cacgtgcccg actaccgcca gaatgtctac atcccaggca gcaatgccac actgaccaac
2761 gcagctggca agcgggatgg caaggcccca gcaggtggca atggcaacaa gaagaagtcg
2821 ggcaagaagg agaagaagta acatggaggc caggccaaga gccacagggc agcctctccc
2881 caaccagccc agcttctcct tacctgcacc caggcctcag agtttcaggg ctaaccccca
2941 gaatactggt aggggccaag gccatgctcc ccttgggaaa cagaaacaag tgcccagtca
3001 gcacctaccc cttccccccc agggggttga atatgcaaaa gcagttccgc tgggaacccc
3061 catccaatca actgctgtac ccatgggggt agtggggtta ctgtagacac caagaaccat
3121 ttgccacacc ccgtttagtt acagctgaac tcctccatct tccaaatcaa tcaggcccat
3181 ccatcccatg cctccctcct ccccacccca ctccaacagt tcctctttcc cgagtaaggt
3241 ggttggggtg ttgaagtacc aagtaaccta caagcctcct agttctgaaa agttggaagg
3301 gcatcatgac ctcttggcct ctcctttgat tctcaatctt cccccaaagc atggtttggt
3361 gccagcccct tcacctcctt ccagagccca agatcaatgc tcaagttttg gaggacatga
3421 tcaccatccc catggtactg atgcttgctg gatttaggga gggcattttg ctaccaagcc
3481 tcttcccaac gccctgggga ccagtcttct gttttgtttt tcattgtttg acgtttccac
3541 tgcatgcctt gacttccccc acctcctcct caaacaagag actccactgc atgttccaag
3601 acagtatggg gtggtaagat aaggaaggga agtgtgtgga tgtggatggt gggggcatgg
3661 acaaagcttg acacatcaag ttatcaaggc cttggaggag gctctgtatg tcctcagggg
3721 actgacaaca tcctccagat tccagccata aaccaataac taggctggac ccttcccact
3781 acataatagg gctcagccca ggcagccagc tttgggctga gctaacagga ccaatggatt
3841 aaactggcat ttcagtccaa ggaagctcga agcaggttta ggaccaggtc cccttgagag
3901 gtcagagggg cctctgtggg tgctgggtac tccaga
//